PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 486aa    MW: 54430.5 Da    PI: 8.4783
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.41e-10194224535
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekv 35 
                      k  rr+++NReAAr+sR+RKka++++Le   
  Vradi03g00030.1 194 KTLRRLAQNREAARKSRLRKKAYVQQLESSR 224
                      7789***********************9754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-8187236No hitNo description
SMARTSM003382.7E-8190263IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232192236IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-7194236No hitNo description
PfamPF001706.4E-8194229IPR004827Basic-leucine zipper domain
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
PfamPF141442.1E-31286359IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MASKTTNQTT NNQLEPLPPP QHRHPHPHHY QLQQHQPQNH QVHDHQISFG MMQSSSSSSS  60
IPGNYLRGKD SGAYDLGELD QAFFLYLDGQ ADPSTVQDQR QNSSSGMRPP TLNIFPSKPM  120
HVEPSSSKSK ANIELVSPQT SGSKRPSEPS MELANPRNEA ASAPQPPKAV KRESNRKGPT  180
SSSEQEGPKT PDPKTLRRLA QNREAARKSR LRKKAYVQQL ESSRVRLNQL EQELQRARTQ  240
GMFLGGGSLL GGEQSLPVAM NTISSEAAMF DVEYARWVEE HHRIVCELRA AVQEHLPENE  300
LRLFVDNCLA HYDQVMNLKS LVAKTDVFHL VSGMWKTPAE RCFMWIGGFK PSELIKIILS  360
QIEPLTEQQI LGICGLQQST QEAEEALSQG LEALNQSISD TIASDSLSYP LNMANYMGQM  420
AVAMNKLSTL EGFVRQADNL RHQTIHRLHQ LLTTRQAARC FLAIAEYFHR LRALSSLWLA  480
RPRVE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi03g00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-143AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634760.10.0bZIP transcription factor TGA10 isoform X1
RefseqXP_022634761.10.0bZIP transcription factor TGA10 isoform X1
RefseqXP_022634762.10.0bZIP transcription factor TGA10 isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A3Q0ESS50.0A0A3Q0ESS5_VIGRR; bZIP transcription factor TGA10 isoform X1
STRINGXP_007162295.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein