PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0397s00040.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 514aa MW: 54937.7 Da PI: 10.0127

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0397s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Vradi0397s00040.1 55 FICEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP
2	zf-C2H2	13.9	0.00016	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Vradi0397s00040.1 131 WKCEKCSKKYAVQSDWKAHTKTC 153 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-5	54	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.1E-7	54	77	No hit	No description
SMART	SM00355	0.022	55	77	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.2E-5	55	77	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	55	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	96	126	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	119	152	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.1E-7	126	151	No hit	No description
SMART	SM00355	130	131	151	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MHKFSSLALF GIGRCIKGPP RSNLWVPHRL SDRDRDPDAE VIALSPKTLM ATNRFICEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE VRKKVYICPE QSCVHHDPAR ALGDLTGIKK 120 HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSRKD SFITHRAFCD 180 ALAEESARLT SVTSTNLNFK SEEGGNVMNS QAGLGGHGLI AAAAAQSIQN VSGIPQFGPH 240 GFRLDFNGME QPRPSLSLWL NQGNPQLNNN NSNVNGNNNG TDVGPNYMSS CSSSGLPDIV 300 QMAQANALMG STSMVSNFGV PAGSNSTSAN LSLSSLPIGK RGEAGGTVVD LASIYNSEGP 360 NKNSKPASPM SATALLQKAA QMGSTRSTNP SIFSGSFGSP SSQTTSLNNN NNGAAAMMLG 420 SNTTPATDFT SMTHSPNGFD QLVMQTNAQL QSEPVKLKLR SSAVEHNLTR DFLGVSGGGG 480 GGGGGGPQFL PQELAKFASM GSPMGLSHFT GNR*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MHKFSSLALF GIGRCIKGPP RSNLWVPHRL SDRDRDPDAE VIALSPKTLM ATNRFICEIC  60
NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE VRKKVYICPE QSCVHHDPAR ALGDLTGIKK  120
HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSRKD SFITHRAFCD  180
ALAEESARLT SVTSTNLNFK SEEGGNVMNS QAGLGGHGLI AAAAAQSIQN VSGIPQFGPH  240
GFRLDFNGME QPRPSLSLWL NQGNPQLNNN NSNVNGNNNG TDVGPNYMSS CSSSGLPDIV  300
QMAQANALMG STSMVSNFGV PAGSNSTSAN LSLSSLPIGK RGEAGGTVVD LASIYNSEGP  360
NKNSKPASPM SATALLQKAA QMGSTRSTNP SIFSGSFGSP SSQTTSLNNN NNGAAAMMLG  420
SNTTPATDFT SMTHSPNGFD QLVMQTNAQL QSEPVKLKLR SSAVEHNLTR DFLGVSGGGG  480
GGGGGGPQFL PQELAKFASM GSPMGLSHFT GNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-38	127	196	3	72	Zinc finger protein JACKDAW
5b3h_F	1e-38	127	196	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	93	KLRQRSNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0397s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014524274.1	0.0	zinc finger protein JACKDAW
Swissprot	Q9LVQ7	1e-107	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A1S3W1W6	0.0	A0A1S3W1W6_VIGRR; zinc finger protein JACKDAW
STRING	XP_007145228.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-94	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]