PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0393s00140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 481aa    MW: 52243.8 Da    PI: 9.9728
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0393s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.4e-11303361563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +a l++++
  Vradi0393s00140.1 303 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQN 361
                        9*************************************************999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-18299363IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909301364IPR004827Basic-leucine zipper domain
PfamPF001701.7E-9303361IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-11303359No hitNo description
SuperFamilySSF579592.95E-11303354No hitNo description
CDDcd147034.83E-26304355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGENEEATND MMQRLHCSSS FLKQPLNMEQ LSIPQFNPSQ MRARHQHQFD GGNSNKRAGI  60
PPSHPHQIPP ISPYSQIPVT RQQQMGSHNI SPTPSHTRSL SQPSFFSLDS LPPLSPSPFR  120
DSSSTSVSEA ADVSMEDRDV TSHSLLPPSP FARTLNTSTN SNLPLPPRKA HRRSNSDIPF  180
GFSTVLQSSP PLIPLRGREN PVLAKPAQLV KRETPWDRGV DHSNVEGSGE KKSPEGELNF  240
GDESPKLPPS PGPKTGLISP AGGVDGNSSA FSLEFGNGEF SGPELKKIMA NEKLAEIALT  300
DPKRAKRILA NRQSAARSKE RKMRYISELE HKVQTLQTEA TTLSAQLTLL QRDSAGLTNQ  360
NSELKFRLQS MEQQAKLRDA LNEALTAEGS IIDNCEALFC SSSAFGVVTF HRSYLSSTTT  420
APTSLNLMAP PPGPYSGAST LALVARASAF SFGVVYGSIK LKYLKAKAKS HKKAQEKAHH  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0393s00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524330.11e-170probable transcription factor PosF21
TrEMBLA0A1S3W1451e-168A0A1S3W145_VIGRR; probable transcription factor PosF21
STRINGXP_007131742.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-58bZIP family protein