PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0374s00040.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 238aa MW: 26192.1 Da PI: 5.2831

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0374s00040.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	98	199	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....seceaesssssasnsssg.. 88 +kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s + +c+ ++s+ s++n+s + Vradi0374s00040.1 98 AKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGSisggDKCSGDASVDSNNNKSLAgn 189 79*************************************************************55555444566755566665555554445 PP TCP 89 .........k 89 Vradi0374s00040.1 190 wdtngaftgY 199 5555555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-36	98	192	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.814	99	157	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MFSSTYDSNL FPNFPSSSYP ILPFLIDPEN DFASNTLFDD PLLVPFTPIT HDPPFPEETV 60 ANFAVADCTA ILEQDANTNY GSHNGSMSNF LTQKPAIAKK DRHSKIHTSQ GLRDRRVRLS 120 SEIARKFFDL QDMLEFDKPS NTLEWLFTKS ENAIKELAQS KHSGSISGGD KCSGDASVDS 180 NNNKSLAGNW DTNGAFTGYS NFCAIGTMNL STCFMNPCFP DSSKAKQKST TYFTKAL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269\|PubMed:16236768, ECO:0000269\|PubMed:8893002}.
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0374s00040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523924.1	1e-133	transcription factor DICHOTOMA-like
Swissprot	O49250	1e-26	CYCLD_ANTMA; Transcription factor CYCLOIDEA
Swissprot	Q9SBV6	1e-26	CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	A0A1S3W0Y8	1e-132	A0A1S3W0Y8_VIGRR; transcription factor DICHOTOMA-like
STRING	XP_007143293.1	1e-128	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	3e-27	TCP family protein

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647] Reeves PA,Olmstead RG Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution. Mol. Biol. Evol., 2003. 20(12): p. 1997-2009 [PMID:12885953] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Luo D,Carpenter R,Vincent C,Copsey L,Coen E Origin of floral asymmetry in Antirrhinum. Nature, 1996. 383(6603): p. 794-9 [PMID:8893002]