PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0363s00120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 664aa    MW: 72426.7 Da    PI: 6.3783
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0363s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-11336381755
                AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi0363s00120.1 336 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 381
                        899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.92E-15254314No hitNo description
SuperFamilySSF541713.79E-11254314IPR016177DNA-binding domain
SMARTSM003803.2E-14255318IPR001471AP2/ERF domain
PROSITE profilePS5103214.421255312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-10255313IPR001471AP2/ERF domain
PRINTSPR003675.1E-5256267IPR001471AP2/ERF domain
PROSITE profilePS5103216.871330389IPR001471AP2/ERF domain
SMARTSM003801.1E-26336395IPR001471AP2/ERF domain
PfamPF008475.9E-7336381IPR001471AP2/ERF domain
CDDcd000184.25E-21336391No hitNo description
SuperFamilySSF541719.81E-15337391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-15337390IPR001471AP2/ERF domain
PRINTSPR003675.1E-5371391IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MGSMNLLGFS LSPQEHPSSQ DHSQTAPSRF GFNPAGISST DVAGNCFNLT SDSTPHLANL  60
PSYGGIYDIH NTVQDWKENY NSQNLLLGTS CSNQNMNNDQ HQHQQQQPKL ENFLGGHSFG  120
EHDQTYGGNS ASTDYMFPSQ PVATSGGSST SNSNSIGLSM IKTWLRNQPP PSENNNNESG  180
GGNSGSSVQT LSLSMSTGSQ SNTSLPVLSA NVENGESSSD NKQPPTTTAL DITPTGATES  240
APRKSIDTFG QRTSIYRGVT RYEAHLWDNS CRREGQTRKG RQGGYDKEEK AARAYDLAAL  300
KYWGTTTTTN FPISHYEKEV EEMKHMTRQE YVASLRRHHQ HGRWQARIGR VAGNKDLYLG  360
TFSTQEEAAE AYDVAAIKFR GLSAVTNFDM SRYDVKSILE STTLPIGGAA KRLKDMEQVE  420
LNVEAHRTDQ EDHHSSILNS HLTQGISNNY AGGGTATTHQ NWHNGLSFHQ PQPCTAMHYP  480
YGQRLWCKQE QHDNSDTSHP LSYPEIHQLQ LGNNGTHNFF HTNSGLHPIM NMDSASIDNS  540
SSSNSVVYDG YGGGGGYVIP IGTGTVVASD GDHNNQRGSN GFGDNEMKVL GYEGVYGSND  600
AYHAHARNFY YLSQQQSASV DAVKYDQGSA CNTWVPTAIP TLAPRSTSMT LCHAAPPFSL  660
LHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0363s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523188.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A1S3VXU90.0A0A1S3VXU9_VIGRR; AP2-like ethylene-responsive transcription factor BBM1
STRINGXP_007139701.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-109AP2 family protein