PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0339s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 180aa    MW: 20114.8 Da    PI: 10.0469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0339s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-154794254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +++h e+ErrRR+riNs +++Lr+llP+a      K +Ka+ L ++ve++k L
  Vradi0339s00010.1 47 CKSHREAERRRRQRINSHLSTLRSLLPNA-----AKSDKASLLAEVVEHVKRL 94
                       789*************************8.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9994594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-124794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1448101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-144898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-55897No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MLPFRRFYGF QSWLDRDSTH VPNTFIKRSV EFDGTRSKAD RKSTEACKSH REAERRRRQR  60
INSHLSTLRS LLPNAAKSDK ASLLAEVVEH VKRLKKQADE VACGDGGEPG AVRSEAWPLP  120
GECDEATVRW CEGETNRVKA TVCCEDRAGL NRDVTRAIRN GVGIVAVRLL LLERNGKLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0339s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-118AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521838.11e-114transcription factor bHLH30-like
TrEMBLA0A1S3VTY01e-112A0A1S3VTY0_VIGRR; transcription factor bHLH30-like
STRINGXP_007141266.11e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-23basic helix-loop-helix 32