PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0335s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 231aa    MW: 25350 Da    PI: 5.6412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0335s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192069255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr ++ +gr++AeIrdp +   ++r++lg+f++ae+Aa+a++aa++ l+g
  Vradi0335s00040.1 20 KYRGVRKRP-WGRFAAEIRDPLK---KARVWLGTFDSAEDAARAYDAAARTLRG 69
                       8********.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-191977No hitNo description
Gene3DG3DSA:3.30.730.101.5E-322077IPR001471AP2/ERF domain
PROSITE profilePS5103223.8282077IPR001471AP2/ERF domain
PfamPF008474.6E-132069IPR001471AP2/ERF domain
SMARTSM003801.3E-362083IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-222078IPR016177DNA-binding domain
PRINTSPR003671.3E-102132IPR001471AP2/ERF domain
PRINTSPR003671.3E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGGDNAGESG SRPVFFKEQK YRGVRKRPWG RFAAEIRDPL KKARVWLGTF DSAEDAARAY  60
DAAARTLRGP KAKTNFPLPP PFYHPDPFTD HRYFAGPGEP FHDHRQPTSS GMSSTVESFS  120
GPRAAATTAN PVAVPRRYPR TPPVVPEDCR SDCDSSSSVV EDGDGDNAAS SFRREPLPFD  180
LNVLPLEDSD AANGGVDNDI CLAHLQTLSK CAKIEHNELP YDFLWLNDDQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-221778264ATERF1
3gcc_A9e-221778264ATERF1
5wx9_A1e-21877272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0335s00040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521856.11e-143ethylene-responsive transcription factor 3
SwissprotO803391e-48ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A1S3VTZ81e-141A0A1S3VTZ8_VIGRR; ethylene-responsive transcription factor 3
STRINGXP_007146520.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.13e-24ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]