PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0332s00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 423aa    MW: 45733.7 Da    PI: 6.4522
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0332s00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-10221279563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l+ l+     l se+
  Vradi0332s00110.1 221 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLSLLQRDTNGLNSEN 279
                        9***********************************************99998888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-16217281IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.093219282IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-11221272No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-9221277No hitNo description
PfamPF001702.2E-9221279IPR004827Basic-leucine zipper domain
CDDcd147031.44E-25222271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDKDKSLGHG GGLPPPSARY SGYSPSGTAF SVKSEPPSSS TSSYPPLAPG ISTPESSGFS  60
HDISRMPDNP PRNRGHRRAH SEILTLPDDI SFDSDLGVVG GADGPSFSDE AEEDLLSMYL  120
DMDKFNSSSA TSTFQMGEPS GAMGASGSAS ASGAPTSSAE NSAVGTLERP RVRHQHSQSM  180
DGSTTIKPEL LVSGSEDLSA ADSKKAMSAA KLAELALIDP KRAKRIWANR QSAARSKERK  240
MRYIAELERK VQTLQTEATS LSAQLSLLQR DTNGLNSENS ELKLRLQTME QQVHLQDALN  300
DALKEEIQHL KILTGQAMPP NGGGPMLNFA SFGGGQQFYP NNHAMHTLLA AQQFQQLQIH  360
PQKQHQFQQL QQQMLQQQQQ QQQREQQHQQ SSDMKMREAS PTPCPPKDNA LSDVNPSGAK  420
DC*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0332s00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521923.10.0probable transcription factor PosF21
RefseqXP_014521924.10.0probable transcription factor PosF21
SwissprotQ040881e-153POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1S3VU610.0A0A1S3VU61_VIGRR; probable transcription factor PosF21
STRINGXP_007150443.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-134bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]