PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0332s00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 423aa MW: 45733.7 Da PI: 6.4522 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.3 | 2.2e-10 | 221 | 279 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ l se+ Vradi0332s00110.1 221 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLSLLQRDTNGLNSEN 279 9***********************************************99998888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.4E-16 | 217 | 281 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.093 | 219 | 282 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-11 | 221 | 272 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.5E-9 | 221 | 277 | No hit | No description |
Pfam | PF00170 | 2.2E-9 | 221 | 279 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.44E-25 | 222 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDKDKSLGHG GGLPPPSARY SGYSPSGTAF SVKSEPPSSS TSSYPPLAPG ISTPESSGFS 60 HDISRMPDNP PRNRGHRRAH SEILTLPDDI SFDSDLGVVG GADGPSFSDE AEEDLLSMYL 120 DMDKFNSSSA TSTFQMGEPS GAMGASGSAS ASGAPTSSAE NSAVGTLERP RVRHQHSQSM 180 DGSTTIKPEL LVSGSEDLSA ADSKKAMSAA KLAELALIDP KRAKRIWANR QSAARSKERK 240 MRYIAELERK VQTLQTEATS LSAQLSLLQR DTNGLNSENS ELKLRLQTME QQVHLQDALN 300 DALKEEIQHL KILTGQAMPP NGGGPMLNFA SFGGGQQFYP NNHAMHTLLA AQQFQQLQIH 360 PQKQHQFQQL QQQMLQQQQQ QQQREQQHQQ SSDMKMREAS PTPCPPKDNA LSDVNPSGAK 420 DC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00126 | DAP | Transfer from AT1G06070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0332s00110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521923.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_014521924.1 | 0.0 | probable transcription factor PosF21 | ||||
Swissprot | Q04088 | 1e-153 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | A0A1S3VU61 | 0.0 | A0A1S3VU61_VIGRR; probable transcription factor PosF21 | ||||
STRING | XP_007150443.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5517 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 1e-134 | bZIP family protein |
Publications ? help Back to Top | |||
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