PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0332s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 255aa    MW: 29460.1 Da    PI: 6.3585
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0332s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.86.8e-2777167190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++  +++++    + + tr gC+a++++ +++ gkw+vtk+++eHnH+l+
  Vradi0332s00010.1  77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKLM 167
                        6******************************************99883333.2448899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-2477167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDHESGQGFD SDDSDLDMQA EISEKHQKLD EFSKNLELCG SEDEKFVELP ATEIPTDIEA  60
VEPFIGMEFS SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK  120
YVHRKDRVLP PPPATREGCQ AMIRLALRDG GKWVVTKFVK EHNHKLMSPS KVPWRGSGKH  180
LVSEDEKDRR IRELSLELYN ERQKCKRRCA AYEEQLNMIL NDLEKHTEHI SEKVAAVVRS  240
IREIEEEKSD SDSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0332s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521907.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_022631925.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_022631926.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_022631927.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A1S3VUQ20.0A0A1S3VUQ2_VIGRR; protein FAR1-RELATED SEQUENCE 5 isoform X1
STRINGXP_007150429.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-44FAR1 family protein