PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g14460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 290aa    MW: 32584.5 Da    PI: 9.4549
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g14460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.6e-32135191158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +++rkpylheSRh hA+rR+Rg+gGrF
  Vradi02g14460.1 135 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IRNRKPYLHESRHLHAMRRARGNGGRF 191
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-37133194IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.811134194IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.1E-28136191IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-24137159IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860139159IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24168191IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MREKISKMPG KPDCDDYGEQ IQFHPWWRSI GENASKSSSA DRLNGSPSLP GTDKTGGKEY  60
QNIKHDLSSI SFSMDKYLAP NPHTEFVGHS VVLTSPYSDA QYGQILTTYG QQVMINPPLY  120
GMHQARMPLP LEMEEEPVYV NAKQYHGILR RRQSRAKAEL EKKVIRNRKP YLHESRHLHA  180
MRRARGNGGR FLNTKKLENN SSSVTSDEGN NSGANPSANS FNTLHRPTNN ENLASSNMVQ  240
DMQRVQSFNN GYHNGNCLTA LYLSQVNGKK EGGDYFGEGL NLIQLMMLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20135195262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g14460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493349.10.0nuclear transcription factor Y subunit A-9
RefseqXP_014493350.10.0nuclear transcription factor Y subunit A-9
RefseqXP_014493351.10.0nuclear transcription factor Y subunit A-9
SwissprotQ945M92e-43NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A1S3THW80.0A0A1S3THW8_VIGRR; nuclear transcription factor Y subunit A-9
STRINGXP_007133814.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-36nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]