PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g13600.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 374aa    MW: 40958.8 Da    PI: 9.539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g13600.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.61.7e-2850142366
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................s 66 
                      g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +                             +
  Vradi02g13600.1  50 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLqfpqgfgqfhhpqtllpfhdssssqlslgP 142
                      79*************************************************************666666544444444433322222222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.63551109IPR017887Transcription factor TCP subgroup
PfamPF036347.6E-2751173IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMMGSSREGQ QAKQEGGAIN IDKFSKASSS TRQWSAFRNP RIVRVSRSFG GKDRHSKVCT  60
IRGLRDRRIR LSVPTAIQLY DLQDKLGLNQ PSKVIDWLLE ATKLDIDKLP PLQFPQGFGQ  120
FHHPQTLLPF HDSSSSQLSL GPFGESSSSF VRDGGVQNSM AKSRYWDSID SISRLKGKEG  180
EKGKWVKTNE DENQEDDVVG SYSNLHASTQ RLFPMGSGTT TTHSLLPGLL NNTMPYNPYN  240
AEPSGLSLSQ FGGHGLFPSQ QVDPGPSSAN GVQFPSSLAL PSSASQFFLG SSSATPPMFT  300
TYAPFLTPSL DNDPRQFNHI QFLNSASQIL PHPLIPSLHS LNPHVRPFPA TPFSSKLLES  360
DSIRSQHDKD SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1856110155Putative transcription factor PCF6
5zkt_B4e-1856110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g13600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493461.10.0transcription factor TCP5
RefseqXP_014493462.10.0transcription factor TCP5
TrEMBLA0A1S3TI750.0A0A1S3TI75_VIGRR; transcription factor TCP5
STRINGXP_007138359.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5