PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g12730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 24114.8 Da PI: 9.8264 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.5e-21 | 95 | 145 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+ge Vradi02g12730.1 95 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 145 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.72E-37 | 94 | 154 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-33 | 95 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.617 | 95 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-40 | 95 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-23 | 95 | 153 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-14 | 96 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTTVMDMYND QELMKALEPF MKTDSSITYP SLSSPNYDQK PLINQASSIK LNQLTPSQTF 60 QIQAQIQVTR AQFLSPKPVP MKQVSGRVLS KPTKLYRGVR QRHWGKWVAE IRLPKNRTRL 120 WLGTFETAEE AALAYDNAAF KLRGENARLN FPHLRHHGPS VYGELGTYKP LPSAVEAKLE 180 AICQSLAITT HKEETATTSE GASTCVVYLF VLPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 94 | 152 | 4 | 63 | ATERF1 |
3gcc_A | 1e-23 | 94 | 152 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g12730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493383.1 | 1e-149 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 2e-62 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A1S3THY2 | 1e-148 | A0A1S3THY2_VIGRR; ethylene-responsive transcription factor ERF060 | ||||
STRING | XP_007163638.1 | 1e-112 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 1e-55 | ERF family protein |