PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g12620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 408aa    MW: 45643.7 Da    PI: 7.1555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g12620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.4e-07152173223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F+r  nL+ H+r H
  Vradi02g12620.1 152 FCEICGKGFRRDANLRMHMRAH 173
                      6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-6148174No hitNo description
SMARTSM003550.0017151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905151178IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-6153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035525198231IPR015880Zinc finger, C2H2-like
SMARTSM0035579236258IPR015880Zinc finger, C2H2-like
SuperFamilySSF556203.67E-14351407No hitNo description
Gene3DG3DSA:3.30.1130.104.1E-16351407No hitNo description
PfamPF021524.8E-12354407IPR006157Dihydroneopterin aldolase/epimerase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006760Biological Processfolic acid-containing compound metabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0004150Molecular Functiondihydroneopterin aldolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MPNSNSNPKA DPILNFNTQD PNTTANPQLP LQNLSQVRTR IDSLQHFLSQ SISTSTPLTT  60
DQIAMVSTHI ISSIHQIIVN GAALVTYSQH ATAAVTPDAL SYPKPEPSAT DKNKQLLDSN  120
LEPPEDGDGV KEDDWEIVEL DAVELLAEHI HFCEICGKGF RRDANLRMHM RAHGDQFKTP  180
EALARPSETG AAKGAMQFSC PFEGCNRNKL HRRFRPLKSA VCLKNHFKRS HCPKMYSCTR  240
CHKKHFSVLS DLKSHAKHCG ECRWKCTCGT MFSRKDKLFG HIALFEGHAP ALACDEEGKG  300
KQVAEDDNEN PILTTDSGFE LTTFWTRMCM VYVYDTEQVK LKWNPMHSWG DKLVLRGLSF  360
HGFQGAKPEE RKLGQKFVVD IDAWMDLAAA GKTDHLSDTL SYTAIYE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sql_A4e-183504062177dihydroneopterin aldolase
1sql_B4e-183504062177dihydroneopterin aldolase
1sql_C4e-183504062177dihydroneopterin aldolase
1sql_D4e-183504062177dihydroneopterin aldolase
1sql_E4e-183504062177dihydroneopterin aldolase
1sql_F4e-183504062177dihydroneopterin aldolase
1sql_G4e-183504062177dihydroneopterin aldolase
1sql_H4e-183504062177dihydroneopterin aldolase
1sql_I4e-183504062177dihydroneopterin aldolase
1sql_J4e-183504062177dihydroneopterin aldolase
1sql_K4e-183504062177dihydroneopterin aldolase
1sql_L4e-183504062177dihydroneopterin aldolase
1sql_M4e-183504062177dihydroneopterin aldolase
1sql_N4e-183504062177dihydroneopterin aldolase
1sql_O4e-183504062177dihydroneopterin aldolase
1sql_P4e-183504062177dihydroneopterin aldolase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g12620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493734.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A1S3TIX90.0A0A1S3TIX9_VIGRR; protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_007163652.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.35e-75C2H2 family protein