PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g11390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family DBB
Protein Properties Length: 297aa    MW: 32459.4 Da    PI: 5.8231
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g11390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.2e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Vradi02g11390.1  4 QCNVCEAAEAKVLCCADEAALCLECDEKVHAAnklatkHQRVPL 47
                     7******99*********************66899999999986 PP
2zf-B_box25.42.9e-085486335
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                      +kC+ ++e    +fC +++ llC++C +++H 
  Vradi02g11390.1 54 VPKCDICQEMVGYFFCLEDRALLCRNCDVSIHT 86
                     589*******9*********************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000211.88E-7347No hitNo description
SMARTSM003362.0E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.935299IPR000315B-box-type zinc finger
SMARTSM003361.4E-145299IPR000315B-box-type zinc finger
PfamPF006431.8E-65495IPR000315B-box-type zinc finger
CDDcd000212.67E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCLECDE KVHAANKLAT KHQRVPLSLS ASHVPKCDIC  60
QEMVGYFFCL EDRALLCRNC DVSIHTVNAC VSGHQRFLLT GVRVGLEATE PGASSSSVKS  120
QSGEKISDAK SSSISRNVSS MPQPPNFNEV FPSEMGGVED FPPNKVSYGG GYTAGNISQW  180
PMEEFLGLNE FSQYYNYMDG SSKADSGKLG DSDSSVLRSS EEEIDDDGFL GRVPDSSWTV  240
PQIPSPPTAS GLHCPELRRY TSDNAMFVPD ICFSGERRQP RRVLHHSIHP KRRRNL*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g11390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493305.10.0B-box zinc finger protein 22 isoform X1
RefseqXP_022634508.10.0B-box zinc finger protein 22 isoform X1
SwissprotQ9SYM21e-84BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S3THS00.0A0A1S3THS0_VIGRR; B-box zinc finger protein 22 isoform X1
STRINGXP_007133306.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-71light-regulated zinc finger protein 1