PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g10520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 126aa MW: 14670.8 Da PI: 9.6903 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.4e-19 | 22 | 75 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+++Le++F++n+++ e++ +LA++l ++ rqV +W+qN+Ra++k Vradi02g10520.1 22 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLAVPPRQVAIWYQNKRARWK 75 66789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.8 | 4.6e-36 | 22 | 108 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +k+rl++eqv++LE++F ++ kLepe+K +la++L + prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+veeL Vradi02g10520.1 22 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLAVPPRQVAIWYQNKRARWKTQSLEMDHGVLQAKLENVMAEKKQLEKDVEELY 108 79***************9999****************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-18 | 12 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.904 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 19 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.13E-13 | 20 | 78 | No hit | No description |
Pfam | PF00046 | 9.5E-17 | 22 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-18 | 23 | 82 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MGDLIFSFKT QQEHGHQRAK HNKKRLTEEQ VTILEKCFAS NMKLEPEQKF HLANQLAVPP 60 RQVAIWYQNK RARWKTQSLE MDHGVLQAKL ENVMAEKKQL EKDVEELYAY FMGANYGSGL 120 HEKRA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g10520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-146 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493595.1 | 5e-73 | homeobox-leucine zipper protein ATHB-52 | ||||
Swissprot | Q9FN29 | 3e-29 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A1S3TIL6 | 1e-71 | A0A1S3TIL6_VIGRR; homeobox-leucine zipper protein ATHB-52 | ||||
STRING | XP_007133162.1 | 1e-65 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-31 | homeobox protein 52 |