PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g10510.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 364aa MW: 39609.6 Da PI: 6.7719

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g10510.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116	4.9e-36	22	119	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnsssg. 88 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + +a+++ ++++ +n+s + Vradi02g10510.1 22 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELppwnP--TATSMqpPQQQEIALRENKSLPa 113 79**************************************************************76441..33222223333333333333333 PP TCP 89 .....k 89 + Vradi02g10510.1 114 eqdptA 119 222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-33	22	131	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.033	24	82	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MRAGAGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR RVRLAAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKTAID ELAELPPWNP TATSMQPPQQ QEIALRENKS LPAEQDPTAF 120 GNRGESNVVV AATRVPEQFS HQQLESENAN IGTSKYTSGP GFLPPSLDTD NIAETIKTFF 180 PVEATTTSFQ SYPPAPPDLR QQDLRLSLQS FQDPIMLQHQ PQSHNEPVLF AGTALGFDGG 240 SAWSEHQNHH SEEHRLLFGG NSGHGGGFVF NTPAPAFGQF FSQRGPLQSS NTPSVRAWID 300 PSVDHHHHNH HYFSPLIHQG SVAGGFSNGG GFSGFRIPAR IQGEEEHDGV SDKPSSASSD 360 SRH*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MRAGAGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKTAID ELAELPPWNP TATSMQPPQQ QEIALRENKS LPAEQDPTAF  120
GNRGESNVVV AATRVPEQFS HQQLESENAN IGTSKYTSGP GFLPPSLDTD NIAETIKTFF  180
PVEATTTSFQ SYPPAPPDLR QQDLRLSLQS FQDPIMLQHQ PQSHNEPVLF AGTALGFDGG  240
SAWSEHQNHH SEEHRLLFGG NSGHGGGFVF NTPAPAFGQF FSQRGPLQSS NTPSVRAWID  300
PSVDHHHHNH HYFSPLIHQG SVAGGFSNGG GFSGFRIPAR IQGEEEHDGV SDKPSSASSD  360
SRH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-20	29	82	1	54	Putative transcription factor PCF6
5zkt_B	1e-20	29	82	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00203	DAP	Transfer from AT1G53230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g10510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014494079.1	0.0	transcription factor TCP4-like
Swissprot	Q9MAH8	1e-100	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A1S3TJX4	0.0	A0A1S3TJX4_VIGRR; transcription factor TCP4-like
STRING	XP_007133163.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	4e-74	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]