PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g10370.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 124aa    MW: 13664.8 Da    PI: 10.7993
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g10370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-071374655
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                     +f+++++ e+e+  ++  n  p +e  + LA+k            ++ +qV +WFqN+R+  
  Vradi02g10370.1 13 RFNPTEVGEMEAILHEheNAMPAREILTALAEKFseslerkgkiTVQMKQVWNWFQNKRYAI 74
                     588999999999988656999***************99****99999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-11477IPR009057Homeodomain-like
SMARTSM003890.0031781IPR001356Homeobox domain
PROSITE profilePS500719.2321377IPR001356Homeobox domain
PfamPF000464.4E-51374IPR001356Homeobox domain
CDDcd000867.55E-41375No hitNo description
Gene3DG3DSA:1.10.10.602.7E-81381IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFNPTEVG EMEAILHEHE NAMPAREILT ALAEKFSESL ERKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDDATPVRT MPQQPTAAPI PTASVTAGRI  120
LLL*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g10370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-89AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494320.11e-79protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ75e-43SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1S3TKN82e-78A0A1S3TKN8_VIGRR; protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
STRINGXP_007133179.12e-70(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.13e-45sequence-specific DNA binding transcription factors;sequence-specific DNA binding