PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 317aa    MW: 35016.5 Da    PI: 9.5385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002883105223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C++Cg+ F+ ++  + H  + H
  Vradi02g08980.1  83 TCHKCGEQFNKWDAAEAHHLSkH 105
                      7*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028084105IPR007087Zinc finger, C2H2
SuperFamilySSF563992.3E-22107315No hitNo description
Gene3DG3DSA:3.90.228.108.1E-8112292IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPTVWFSLKK SLHCKSEPSD VHDPKTRKHL STILTKRAGR TSSTPPRKSP FLLSDKEGSG  60
PPGLQPSTRL SLETDSNGSS TVTCHKCGEQ FNKWDAAEAH HLSKHAVTEL VEGDSSRKIV  120
EIICRTSWLK SENQCGRIER VLKVHNMQKT LARFEEYREM VKIKASKLQK KHPRCLADGN  180
ELLRFYGTTV ACSLGLNGSS SLCLSEKCCV CRIIRNGFSA KKELKGGIGV FTTSTSGRAF  240
ESIEIFGDEP SLRKALIVCR VIAGRVHRPL ENIQEMAAQT GFDSLAGKVG LYSNIEELYL  300
LNPRALLPCF VVICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
GenBankBT0943660.0BT094366.1 Soybean clone JCVI-FLGm-24D22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494539.10.0uncharacterized protein LOC106756578
RefseqXP_017433925.10.0PREDICTED: uncharacterized protein LOC108340834
TrEMBLA0A0L9V4K00.0A0A0L9V4K0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SAI60.0A0A0S3SAI6_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TL860.0A0A1S3TL86_VIGRR; uncharacterized protein LOC106756578
STRINGXP_007132990.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49831013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-131C2H2 family protein