PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 136aa    MW: 15386.7 Da    PI: 10.5452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.72.9e-084565226
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng 26
                     +y+GVr ++ +gr++AeIrdp   g
  Vradi02g08720.1 45 HYRGVRKRP-WGRYAAEIRDP---G 65
                     7********.**********8...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.2964575IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-54570IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-104570IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRDKKRGAAH DAWHGGRGRL CVTMVAKDKT VIKNKKPTNA ADEVHYRGVR KRPWGRYAAE  60
IRDPGKKSRQ QLLVTPVAPV RPVFLLDRAH YLTHQFPFRF EPAPVQSDSD SSSVVDCQPK  120
RELNLDLNLA PPMDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-98AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492221.11e-30ethylene-responsive transcription factor 9
RefseqXP_027908827.12e-30ethylene-responsive transcription factor 9-like
TrEMBLA0A1S3TEQ53e-29A0A1S3TEQ5_VIGRR; ethylene-responsive transcription factor 9
TrEMBLA0A4D6LGB93e-29A0A4D6LGB9_VIGUN; EREBP-like factor
STRINGXP_007132794.14e-26(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4068522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-13ERF domain protein 12