PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 177aa    MW: 20668.9 Da    PI: 10.8685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-1791138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEd +lv +++++G ++W+  +r  g+ R++k+c++rw +yl
  Vradi02g08010.1  91 KGLWSPEEDTKLVAYITRYGHRNWSQLPRFAGLARCGKSCRLRWMNYL 138
                      678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.673136IPR017930Myb domain
SuperFamilySSF466891.98E-10458IPR009057Homeodomain-like
PfamPF139214.5E-6747No hitNo description
Gene3DG3DSA:1.10.10.602.8E-12750IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-2384141IPR009057Homeodomain-like
PROSITE profilePS5129422.64186142IPR017930Myb domain
SMARTSM007172.1E-1190140IPR001005SANT/Myb domain
PfamPF002494.5E-1491138IPR001005SANT/Myb domain
SuperFamilySSF466897.65E-2393167IPR009057Homeodomain-like
CDDcd001678.33E-1094138No hitNo description
PROSITE profilePS500904.333139176IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-9142166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSPGFWKWRQ LPKFAGLARS GKSCRLRWMN HLRPKIRKAH FSSEEEEYII GMHTKLDGLL  60
FRLSYQEESK NKESTSSMVR TPSSNKSGLR KGLWSPEEDT KLVAYITRYG HRNWSQLPRF  120
AGLARCGKSC RLRWMNYLRP NVKRGNFTPQ EEDCIIRMHK KLGNKYVSSL PYAVIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-158916825103MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150393e-63AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634320.12e-60transcription factor MYB14-like
SwissprotQ7XBH46e-36MYB4_ORYSJ; Transcription factor MYB4
SwissprotQ9FJP21e-35MYB53_ARATH; Transcription factor MYB53
SwissprotQ9SJX84e-36MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A3Q0ERK65e-59A0A3Q0ERK6_VIGRR; transcription factor MYB14-like
STRINGGLYMA12G11390.12e-48(Glycine max)
STRINGXP_007132612.13e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-38myb domain protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  3. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  4. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]