PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g07900.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 750aa    MW: 81904.7 Da    PI: 6.0843
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g07900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2085140156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Vradi02g07900.1  85 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 140
                      688999***********************************************999 PP
2START225.22e-702754951206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++el+ +a+ ++p+W +      +++n+de++++f+++ +     ++ ea+r+++vv+m+++ lve+l+d++ qW++ +     +a+t
  Vradi02g07900.1 275 ELAVAAMEELIGMAQMGDPLWLTTLdatsTILNEDEYIRSFPRGIGpkptgFKCEASRETAVVIMNHVSLVEILMDVN-QWSTVFSgivsRAMT 367
                      57899*******************999****************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+s+g      galq+m+aelq+++plvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skvtwve
  Vradi02g07900.1 368 LEVLSTGvagnynGALQVMTAELQLPTPLVPtRESYFVRYCKQHSDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVTWVE 457
                      *************************************************************99....5************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Vradi02g07900.1 458 HVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 495
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2364140IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1974142IPR009057Homeodomain-like
PROSITE profilePS5007116.92582142IPR001356Homeobox domain
SMARTSM003891.2E-1983146IPR001356Homeobox domain
CDDcd000862.62E-1985143No hitNo description
PfamPF000464.2E-1885140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PROSITE profilePS5084844.182266498IPR002913START domain
SuperFamilySSF559611.98E-35266497No hitNo description
CDDcd088759.14E-130270494No hitNo description
SMARTSM002341.5E-64275495IPR002913START domain
PfamPF018523.4E-59276495IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-5369477IPR023393START-like domain
SuperFamilySSF559611.21E-26514741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MIPARNMPSM IARKNKNNLG GFGSSSSTFT LSQPNLMEAL EMGQNTSESE VPRIREDEFD  60
SATKSGSENH EGASGEDQDP RPNKKKRYHR HTQHQIQEME AFFKECPHPD DKQRKELSRE  120
LGLEPLQVKF WFQNKRTQMK TQHERHENTQ LRTENEKLRA DNMRYREALS NASCPNCGGP  180
TAIGEMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVV NYSNISPSLP PRPLELGVGA  240
GFGGQPAIGV DMYGAGDLLR SISGPTEADK PIIIELAVAA MEELIGMAQM GDPLWLTTLD  300
ATSTILNEDE YIRSFPRGIG PKPTGFKCEA SRETAVVIMN HVSLVEILMD VNQWSTVFSG  360
IVSRAMTLEV LSTGVAGNYN GALQVMTAEL QLPTPLVPTR ESYFVRYCKQ HSDGTWAVVD  420
VSLDNLRPSP SARCRRRPSG CLIQEMPNGY SKVTWVEHVE VDDRGVHNLY KQLVSSGHAF  480
GAKRWVATLD RQCERLASAM ATNIPTVDVG VITNQEGRKS MMKLAERMVI SFCAGVSAST  540
AHTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF WLPVPPKRVF DFLRDENSRN  600
EWDILSNGGV VQEMAHIANG RDTGNCVSLL RVNSANSSQS NMLILQESCT DSTGSFVIYA  660
PVDIVAMNVV LNGGDPDYVA LLPSGFAILP DGTISHETGA GGSLLTVAFQ ILVDSVPTAK  720
LSLGSVATVN NLIACTVERI KASLSGESA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g07900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022634310.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A3Q0ERJ60.0A0A3Q0ERJ6_VIGRR; homeobox-leucine zipper protein HDG2 isoform X2
STRINGXP_007132557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2