PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi02g07590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 21153.5 Da PI: 8.45 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.6 | 2.2e-27 | 3 | 90 | 42 | 128 |
NAM 42 vePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +P L + +++++++w+fFs+ ++++a+g r++r+t+sgyWkatg+ v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ Vradi02g07590.1 3 DHPPALAgELCRGDTEQWFFFSPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRA 90 5888998555666778**********************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 31.137 | 1 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-29 | 4 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-13 | 6 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MEDHPPALAG ELCRGDTEQW FFFSPGQERE ARGGRPSRTT ASGYWKATGS PGYVYSSDNR 60 VIGVKKSMVF YKGKAPMGRK TKWKMNEYRA ISNPVTPQLR CEFSLYRVYI VSGSFRAFDR 120 RPSETDGTES RFCQSSSQLR QLSQLSQLPE TGDSSSRNWN EEQLQEPSWE LEWEHFNWVE 180 LKN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-19 | 7 | 91 | 66 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-19 | 7 | 91 | 66 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-19 | 7 | 91 | 66 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-19 | 7 | 91 | 66 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swm_B | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swm_C | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swm_D | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swp_A | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swp_B | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swp_C | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
3swp_D | 4e-19 | 7 | 91 | 69 | 146 | NAC domain-containing protein 19 |
4dul_A | 4e-19 | 7 | 91 | 66 | 143 | NAC domain-containing protein 19 |
4dul_B | 4e-19 | 7 | 91 | 66 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi02g07590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-148 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493634.1 | 1e-129 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-61 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1S3TIN1 | 1e-128 | A0A1S3TIN1_VIGRR; NAC domain-containing protein 90 | ||||
STRING | XP_007132453.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-64 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
---|---|---|---|
|