PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g06940.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 412aa MW: 45525.2 Da PI: 8.1483

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g06940.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	7e-11	131	171	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L+ ++ Vradi02g06940.1 131 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQD 171 6889*************************877776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-7	128	205	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	130	174	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-8	131	173	IPR004827	Basic-leucine zipper domain
CDD	cd14708	6.43E-21	132	183	No hit	No description
SuperFamily	SSF57959	4.75E-7	132	175	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-7	133	176	No hit	No description
PROSITE pattern	PS00036	0	135	150	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.6E-30	213	288	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MFPSWPMRFH QTPRVLLSLT SPSLTNSYPK MLTTNTNSTG GSKSGGESTD SGSGMNTLSS 60 KTELQFETES PISIKASSSD HQQAFDQLQQ QQQETATDGS RAGTSQTQSA AKSQQEKRKG 120 AGSTSEKPLD AKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTHLEQ DLQRARSQGV 180 FMGCGGAGGS ILSSGAAMFD LEYARWLEDD HRHMAELRTG LQAPLSDGEL RVIVDGYLSH 240 YDEVFRLKGV AAKTDVFHLI NGMWTSPAER CFLWIGGFKP SELITMLIQQ LEPLAEQQIM 300 GICALRHSSV QAEDALTQGL EQLQQSLVET IAGGSADNLR QQTLHQLCRL LTVRQAARCF 360 VVIGEYYGRL RALSSLWASR PRESMISDDN SCQTTTELQM VQPSQNHFSN F*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MFPSWPMRFH QTPRVLLSLT SPSLTNSYPK MLTTNTNSTG GSKSGGESTD SGSGMNTLSS  60
KTELQFETES PISIKASSSD HQQAFDQLQQ QQQETATDGS RAGTSQTQSA AKSQQEKRKG  120
AGSTSEKPLD AKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTHLEQ DLQRARSQGV  180
FMGCGGAGGS ILSSGAAMFD LEYARWLEDD HRHMAELRTG LQAPLSDGEL RVIVDGYLSH  240
YDEVFRLKGV AAKTDVFHLI NGMWTSPAER CFLWIGGFKP SELITMLIQQ LEPLAEQQIM  300
GICALRHSSV QAEDALTQGL EQLQQSLVET IAGGSADNLR QQTLHQLCRL LTVRQAARCF  360
VVIGEYYGRL RALSSLWASR PRESMISDDN SCQTTTELQM VQPSQNHFSN F*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g06940.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-143	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491517.1	0.0	transcription factor TGA9 isoform X1
Refseq	XP_014491525.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	1e-161	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0L9V674	0.0	A0A0L9V674_PHAAN; Uncharacterized protein
STRING	GLYMA12G09430.5	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-150	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]