PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06910.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 284aa    MW: 32732.9 Da    PI: 8.1625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05117136120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C++C+k+F+r  n++ H+
  Vradi02g06910.1 117 FACSICSKTFNRYNNMQMHM 136
                      78*****************9 PP
2zf-C2H216.42.6e-05201223123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk+F  k + ++H +++
  Vradi02g06910.1 201 FMCRKCGKTFAVKGDWRTHEKNC 223
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.35E-6519No hitNo description
SuperFamilySSF576674.35E-6112139No hitNo description
PROSITE profilePS5015710.45117144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5117136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SMARTSM00355190164196IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.99E-6187221No hitNo description
Gene3DG3DSA:3.30.160.606.7E-6197221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704201221IPR007087Zinc finger, C2H2
SMARTSM0035535201221IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
SSSSSFSSSF SFTQHELVHE TIQFLPIKAS KDEDHHQSFE VKEEKLEQVT VALHIGLPDS  60
AKRHREVVDD DDEKMIFHVK EEEEDSSKRS FHGCSFNQER RFWIPTPAQI LVGPMQFACS  120
ICSKTFNRYN NMQMHMWGHG SEFRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK  180
PLKDFRTLQT HYKRKHGTKP FMCRKCGKTF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS  240
LKDHIRSFGK GHNPHPPFEA FEDEKECITG SDEDELNAHH HHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959320.0BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493334.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S3THT60.0A0A1S3THT6_VIGRR; zinc finger protein WIP3
STRINGXP_007132422.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-120WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]