PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06710.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 288aa    MW: 32098.3 Da    PI: 6.9153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-164191155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++   +rWv+eIr+p++   + r+++g++ ++e+Aa+a++ a ++l+g
  Vradi02g06710.1 41 PVYRGVRQRN-GNRWVCEIREPVK---KSRIWVGTYSSPEMAARAHDVAVLALNG 91
                     68*****999.9*********654...5*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-114191IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1942101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-2742101IPR001471AP2/ERF domain
PROSITE profilePS5103220.2844299IPR001471AP2/ERF domain
SMARTSM003808.9E-2442105IPR001471AP2/ERF domain
PRINTSPR003672.8E-64354IPR001471AP2/ERF domain
CDDcd000185.97E-2643101No hitNo description
PRINTSPR003672.8E-66581IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.70.9008.7E-32182282No hitNo description
SuperFamilySSF549091.54E-27183279IPR011008Dimeric alpha-beta barrel
SMARTSM008862.3E-22186280IPR013097Stress responsive alpha-beta barrel
PROSITE profilePS5150227.549186278IPR013097Stress responsive alpha-beta barrel
PfamPF078764.1E-22187279IPR013097Stress responsive alpha-beta barrel
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MINMNMKNKE SPCSISQSPS NPNPSHKRKA GRKKFRETRH PVYRGVRQRN GNRWVCEIRE  60
PVKKSRIWVG TYSSPEMAAR AHDVAVLALN GISAKFNFPD SVSLLPLAKS SSAADIREAA  120
KAATVHDTFT PNSSFSCSSH GNSSFEDSLF NTSMHDDESE TVFFDEEALY NMPGLLDSMA  180
EAMGSFNHYV IVKFKDGVEV EELIQGLEKM VSGIDQVKSF EWGKDIESHE MLRQGFTHVF  240
LMAFNGKEEF NAFQTHPNHV EFSGVFSPAI EKIVVLDFPS KLVKAPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rjj_A3e-371822852105expressed protein
1rjj_B3e-371822852105expressed protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06710.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-168AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523454.21e-126dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI46e-47DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z56e-47DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1S3VZI11e-124A0A1S3VZI1_VIGRR; dehydration-responsive element-binding protein 1F-like
STRINGXP_007132398.19e-94(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-43C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]