PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g06360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 348aa    MW: 37963.7 Da    PI: 5.512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g06360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.6e-07222244123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C+ Cgk F+r  nL+ H+r H
  Vradi02g06360.1 222 YFCQVCGKGFKRDANLRMHMRAH 244
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.08E-6220247No hitNo description
PROSITE profilePS5015713.193222249IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7222278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.7E-4222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMPKATSSSS NDFQASQMFP VNEYLASSSV ELSSSSTSHS STSLLCYLSI LKDKLGQLQN  60
LVDVLVTPQH NLTPMAISTM NATLQEIIVA ATSMRFTCQQ MTLGSSSGTS IANELHRNQN  120
QQQLDHGRVL SPHHPSNFGN NNRGMLSMSS ISMSSYMIRG QSEFLSGIEG GALDWFGESY  180
NNNNIGDCNN IKDEEADRKM MMMGESDIIE LDAADLLAKY SYFCQVCGKG FKRDANLRMH  240
MRAHGEEYKT SAALSNPMKS RDSLLGEGSS SKKYSCPQEG CSTVGTPSGS APVAQHFLGK  300
TSLWAMLLCS SDTPQLFMAS QHMFHDYCTD LCTELDNVAC DNLSFVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g06360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432047.11e-179PREDICTED: zinc finger protein 273
TrEMBLA0A0L9V6E41e-178A0A0L9V6E4_PHAAN; Uncharacterized protein
STRINGXP_007132341.11e-138(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-38C2H2 family protein