PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g06340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 32442.9 Da PI: 8.4164 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Vradi02g06340.1 131 YECKTCNRTFPSFQALGGHRASH 153 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00019 | 206 | 228 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Vradi02g06340.1 206 HECSICGSEFSSGQALGGHMRRH 228 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.7E-13 | 131 | 155 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.46E-9 | 131 | 153 | No hit | No description |
PROSITE profile | PS50157 | 10.305 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.46E-9 | 201 | 228 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 206 | 230 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.159 | 206 | 233 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 206 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 208 | 228 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEGLDSNSNS NSYSSSAQSN IAKGKRTKRM RLLSPSGVVV VTTAATTGVT TSCSSPNSGG 60 SSTTTCESEE EDMANCLILL AQGGESHSHQ PRHHRQQVED HNGVKTAKGN ANTITTTATT 120 AVDTKVGFFI YECKTCNRTF PSFQALGGHR ASHKKPKLSP EEKKPPPSQS PHVAVTTYDR 180 FEEDNVKSGP PISLQLGHGN NKGKIHECSI CGSEFSSGQA LGGHMRRHRS STNTNTVDTS 240 SSNTVIGVAT TVSPPRNVLE LDLNLPAPED DIREAKFQFP VNGAKRSMWT RTLREVSECI 300 TT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g06340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493277.1 | 0.0 | zinc finger protein AZF2 | ||||
TrEMBL | A0A1S3THP5 | 0.0 | A0A1S3THP5_VIGRR; zinc finger protein AZF2 | ||||
STRING | XP_007132339.1 | 1e-151 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-35 | C2H2 family protein |