PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g05730.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 471aa    MW: 51816.1 Da    PI: 8.7618
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g05730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-056486123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  Vradi02g05730.1 64 FICEICSKGFQRDQNLQLHRRGH 86
                     89*******************88 PP
2zf-C2H211.30.001141163123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H + +
  Vradi02g05730.1 141 WKCDKCSKKYAVQSDWKAHSKIC 163
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-76386No hitNo description
SMARTSM003550.0476486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7836486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035578106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-7136161No hitNo description
SMARTSM00355150141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MMSEESFSVP PNTVRDSLVH VQPPSSNPNN NNPNPSSNPA KRRRNPDAEV VALSPKSLMA  60
TNRFICEICS KGFQRDQNLQ LHRRGHNLPW KLKQRTNKDQ VRKKVYVCPE KSCVHHDPSR  120
ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESVRIT TVPAALSNLR NDNHLTNAPA SRIPQIFSGS SGPNPVPDVV  240
QTMDMFGPQF VNYRYPDASF GGANLSVLPP HGLKQEQEEN KGELSHSASS NLYLSSNQNP  300
PHYMSATTVL QKTVQMGSTR VNDNAFCSTG SNRNGNHNNV VNNVVVEVQK LDELVSVEGC  360
TNLGGGGGGY LLNGDSNNSF LVVNGTKGLE HMVMPVDEET TAASIMGKQL HSISSHGKNQ  420
LGLTRDFLGV GDNNIESIRR PFFEQDLVEF NAMGSGSGMN LQSQYGGHYV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36137213372Zinc finger protein JACKDAW
5b3h_F6e-36137213372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190103KLKQRTNKDQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g05730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345898.10.0zinc finger protein BALDIBIS-like
RefseqXP_027345899.10.0zinc finger protein BALDIBIS-like
TrEMBLA0A151TN590.0A0A151TN59_CAJCA; Zinc finger protein JACKDAW (Fragment)
STRINGAES886161e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.14e-92C2H2 family protein