PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g04800.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 660aa    MW: 74456.5 Da    PI: 7.4772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g04800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.71.9e-1132866561373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+avss+d   a++lL++++++ sp g+ +qRla++f++AL+arla++++++y al+ ++ts    ++ ++a++++  ++P+ k+s
  Vradi02g04800.1 286 LRTLLILCAQAVSSDDRVSANELLKQIRQHTSPLGEGTQRLAHCFANALEARLAGTGTQIYTALSYKRTS---AADMVKAYQMYISACPFKKLS 376
                      5789**************************************************************9999...99******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN++Il+ + + e +HiiDf+i +G+QWpaL+  L++R +gpp+lRiTg++ p++g   +e++++tg rLa+++++++vpfefn+ +a+++
  Vradi02g04800.1 377 IIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRVGGPPKLRITGIELPQPGfrPAERVQQTGLRLARYCDRFKVPFEFNA-IAQKW 469
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E laVn++++ ++llde+v l+s+rd+vL+l+++ +P+++++   + ++n++ F++rf eal +ys+lfd l+++++re+ 
  Vradi02g04800.1 470 ETIRVEDLKIKENELLAVNSMFRFQNLLDETVVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDP 563
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r + E+e++gr+++n++aceg er+er et+++W+ r ++aGF+++pl+++  ++ ++ l+ ++   +++ e+ + +++gWk+r +++ S+W
  Vradi02g04800.1 564 MRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNTRAGFRQLPLDKHLINKLRSKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCW 656
                      *****************************************************************777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.146260637IPR005202Transcription factor GRAS
PfamPF035146.6E-111286656IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDPRFEFNFI NGFKPNQVPD TVVVEDQFLV PVNGMMRPFE FGFRDNSPED SGFSDYGSSG  60
TATSNGNSIE SHWGNFDLTD YKPSILQTTF PTDFVFQASS IQSSMNTTNN FSVTDSGFLH  120
SSTAAGCLDP TLFSKSESVL QFERGVEEAN KFLPKVNPLV VDLENPSLRK VPPIQEEIKA  180
ERDEIFAEFR GRKNHGREDE ESDSQDGRSN KQSAVYIDDS EISELLDKVL LGNGCRKEPA  240
PLCICFADLP NGASSSSQKK LEETNKSGGG KSRVKKQGNT KGVVDLRTLL ILCAQAVSSD  300
DRVSANELLK QIRQHTSPLG EGTQRLAHCF ANALEARLAG TGTQIYTALS YKRTSAADMV  360
KAYQMYISAC PFKKLSIIFA NHTILQLAME VESLHIIDFG IRYGFQWPAL IYRLSKRVGG  420
PPKLRITGIE LPQPGFRPAE RVQQTGLRLA RYCDRFKVPF EFNAIAQKWE TIRVEDLKIK  480
ENELLAVNSM FRFQNLLDET VVLNSPRDAV LSLIRKANPT IFIHGTVNGS YNAPFFVTRF  540
REALFHYSTL FDVLDTNVSR EDPMRLMFEK EFFGRRVMNA LACEGCERVE RPETYKQWQV  600
RNTRAGFRQL PLDKHLINKL RSKLKDIYHS DFMLLEDANF MLQGWKGRVV YASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-502696581379Protein SCARECROW
5b3h_D6e-502696581379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g04800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493667.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S3TIT20.0A0A1S3TIT2_VIGRR; scarecrow-like protein 14
STRINGXP_007132057.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]