PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g04510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 328aa    MW: 36606.7 Da    PI: 5.6124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g04510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86.1e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Vradi02g04510.1 20 KGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding538.1e-1773116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++
  Vradi02g04510.1  73 RGAFSPQEEELIVHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-231570IPR009057Homeodomain-like
PROSITE profilePS5129415.0891567IPR017930Myb domain
SuperFamilySSF466891.99E-2718114IPR009057Homeodomain-like
SMARTSM007172.4E-91969IPR001005SANT/Myb domain
PfamPF002491.2E-122067IPR001005SANT/Myb domain
CDDcd001673.53E-82367No hitNo description
PROSITE profilePS5129425.75468122IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2671123IPR009057Homeodomain-like
SMARTSM007178.4E-1672120IPR001005SANT/Myb domain
PfamPF002492.6E-1573116IPR001005SANT/Myb domain
CDDcd001671.51E-1175115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRKPELSAKN NSNINNKLRK GLWSPEEDDK LMNYMLNSGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAFSPQE EELIVHLHSL LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKNMSSNTS PNGSDSSYEP NKDLNMAGFT TNTHQDQHAD FMPMFNSSSS PSPSMHATVL  180
NSIIDRLPML DHGLNVPVSG GFFNATGPCF STQSGVDHKG FYLENGGVFG SVNIGAEGDM  240
YVPPLESVST TSDHNLKVES TCNTDTNNSY FDDINSIILN NCSNKRTENR AGVENLFQQE  300
LTMGEWDLEE LMNDVSSFPF LDFSNIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271412221128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g04510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494074.10.0transcription factor MYB46
TrEMBLA0A1S3TJW90.0A0A1S3TJW9_VIGRR; transcription factor MYB46
STRINGXP_007132019.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.14e-74myb domain protein 83