PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g04020.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 342aa MW: 38643.8 Da PI: 6.4571

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g04020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	154	210	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++ ++L +l l+ l + Vradi02g04020.1 154 KRAKRIWANRQSAARSKERKMRYISELERKVQTLQTDATSLSAQLTLLQRDTNGLNA 210 9******************************************99999887766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-14	150	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.565	152	215	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-8	154	208	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.6E-11	154	208	No hit	No description
SuperFamily	SSF57959	8.44E-11	154	205	No hit	No description
CDD	cd14703	3.43E-24	155	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MERDKDNKSP PLPPSSSSSQ PFSHDIVGMP DNPIKNRGHR RAHSEIITLP DDLTFDTDLP 60 LDDDFLALVD HINSPPLPED DNKIIVNNND YSSNNHDNNV GNERPRVRHQ HSHSMDLSIQ 120 PEMLVSGADD VSGVDTKRAM STDKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYISEL 180 ERKVQTLQTD ATSLSAQLTL LQRDTNGLNA ENGELKLRLQ TMEQQVHLQD ALNDALKEEI 240 QHLKLMTGQA ISNGGHFASF GGGQQFYPNN HAMYTLLAAQ KFQQLQIQSQ KQQQQHQLQQ 300 QQQQFQQQQQ QLQHQLHQQQ QQQQQQTTAA GSVTSTNVVL E*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MERDKDNKSP PLPPSSSSSQ PFSHDIVGMP DNPIKNRGHR RAHSEIITLP DDLTFDTDLP  60
LDDDFLALVD HINSPPLPED DNKIIVNNND YSSNNHDNNV GNERPRVRHQ HSHSMDLSIQ  120
PEMLVSGADD VSGVDTKRAM STDKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYISEL  180
ERKVQTLQTD ATSLSAQLTL LQRDTNGLNA ENGELKLRLQ TMEQQVHLQD ALNDALKEEI  240
QHLKLMTGQA ISNGGHFASF GGGQQFYPNN HAMYTLLAAQ KFQQLQIQSQ KQQQQHQLQQ  300
QQQQFQQQQQ QLQHQLHQQQ QQQQQQTTAA GSVTSTNVVL E*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g04020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014518949.1	0.0	probable transcription factor PosF21
Refseq	XP_014518958.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-108	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1S3VLI9	0.0	A0A1S3VLI9_VIGRR; probable transcription factor PosF21
STRING	XP_007131939.1	1e-164	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	8e-98	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]