PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g03910.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 968aa MW: 106856 Da PI: 5.2334

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g03910.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.9e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Vradi02g03910.1 597 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.927	579	667	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-22	862	951	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.8E-23	864	946	No hit	No description
SMART	SM00666	1.2E-21	867	949	IPR000270	PB1 domain
PROSITE profile	PS51745	21.909	867	949	IPR000270	PB1 domain
Pfam	PF00564	3.0E-16	870	948	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence Send to blast
MEDHFSPKGK ETGYCTSPCT QLEESTSVDG GMKKSASEDM FSNFSELMNF DTYAGWSNSS 60 SMTYHSLANV FSSFSSASYP PSDGLNLVEH GNGPCFMTEV SEIHNGIESS PSCEERGIFQ 120 QMDIQLGFLD EANDSNSFDS EQNRNGSYQQ FNTSDMCNYM ISRSSGRPLD DRMLRALSFF 180 MESVDEGMLA QVWVPIKHGD EFILCTSEQP YLLDPKLAGY REVSRAFTFS AEGKKGSCPG 240 LPARVFTSHV PEWTSNVGYY NKTEYLRLDH ALNHDIRGSI ALPVSDMHSH EPCAVLELVT 300 TKEKPNFDRE LEIVTHALQL VNLKTTMPPR LLPQCLSSNK RAALTEIVDV LRAVCHAHRL 360 PLALTWIPCC YSEGIGDEAE RIRIKEGHTS SNEKCVLCIE ESACYINDGA IGGFVHACVE 420 HHLEEGQGIA GKALQSNHPF FYTDVKTYDI SEYPLVHHAR KYNLNAAVAI RLRSTYTNDD 480 DYILEFFLPV NMTGSSEQQL LLDNLSGTMR RICRSLRTVS DAEITGIEGS VAGLPKEKLT 540 YFFPMSRRNS QIAFINDDND SNQKMSLKAS NNGIEAAHGQ VMNGPRKQIE KKRSTVEKNV 600 SLSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKF DPYTGGFIAG GSLMQEIDTH KYILFPERSA VKDPKHATQK PVSVVSAPGS 720 TSENSTIKLD DDDGVCLVEN KIVDSRSALL SNTSVGGFKK DNASSDDCCE DSKSVAMNDG 780 SSQKAKNQDC PEQTCSISLV TDEAEVGVDG GEGIEEHNNL VNSSSTTNSS NGSGSGSMMH 840 GSSSCSQSFE NQKHSKVKPT SVDSESKMIV KASYRGDTIR FKFDPSAGCF QLYEEVATRF 900 KLQNGLFKLK YLDDEEEWVM LENDSDLQEC VEILHDIGTR CVKFLVRDVP CVLSSCDSNN 960 CFLSDSS*

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence Send to blast

MEDHFSPKGK ETGYCTSPCT QLEESTSVDG GMKKSASEDM FSNFSELMNF DTYAGWSNSS  60
SMTYHSLANV FSSFSSASYP PSDGLNLVEH GNGPCFMTEV SEIHNGIESS PSCEERGIFQ  120
QMDIQLGFLD EANDSNSFDS EQNRNGSYQQ FNTSDMCNYM ISRSSGRPLD DRMLRALSFF  180
MESVDEGMLA QVWVPIKHGD EFILCTSEQP YLLDPKLAGY REVSRAFTFS AEGKKGSCPG  240
LPARVFTSHV PEWTSNVGYY NKTEYLRLDH ALNHDIRGSI ALPVSDMHSH EPCAVLELVT  300
TKEKPNFDRE LEIVTHALQL VNLKTTMPPR LLPQCLSSNK RAALTEIVDV LRAVCHAHRL  360
PLALTWIPCC YSEGIGDEAE RIRIKEGHTS SNEKCVLCIE ESACYINDGA IGGFVHACVE  420
HHLEEGQGIA GKALQSNHPF FYTDVKTYDI SEYPLVHHAR KYNLNAAVAI RLRSTYTNDD  480
DYILEFFLPV NMTGSSEQQL LLDNLSGTMR RICRSLRTVS DAEITGIEGS VAGLPKEKLT  540
YFFPMSRRNS QIAFINDDND SNQKMSLKAS NNGIEAAHGQ VMNGPRKQIE KKRSTVEKNV  600
SLSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVEGGLKF DPYTGGFIAG GSLMQEIDTH KYILFPERSA VKDPKHATQK PVSVVSAPGS  720
TSENSTIKLD DDDGVCLVEN KIVDSRSALL SNTSVGGFKK DNASSDDCCE DSKSVAMNDG  780
SSQKAKNQDC PEQTCSISLV TDEAEVGVDG GEGIEEHNNL VNSSSTTNSS NGSGSGSMMH  840
GSSSCSQSFE NQKHSKVKPT SVDSESKMIV KASYRGDTIR FKFDPSAGCF QLYEEVATRF  900
KLQNGLFKLK YLDDEEEWVM LENDSDLQEC VEILHDIGTR CVKFLVRDVP CVLSSCDSNN  960
CFLSDSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g03910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014494469.1	0.0	protein NLP9
Refseq	XP_014494470.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S3TL18	0.0	A0A1S3TL18_VIGRR; protein NLP9
STRING	XP_007131923.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]