PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g02890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 364aa    MW: 40394.9 Da    PI: 6.19
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g02890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1262e-08149197351
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                      e k  +r   N+eA r++R++Kka+ + Le++v +L a N+ L k+l++
  Vradi02g02890.1 149 EKKSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQN 197
                      5688899999**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.9E-13145215No hitNo description
SMARTSM003387.7E-10147214IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.864149196IPR004827Basic-leucine zipper domain
PfamPF077161.3E-11149204IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-6151198No hitNo description
CDDcd146862.25E-10153206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVIDGVFGKR VVLRIRNYSE RVIGINLNRL KLKREKTDKE KVEGGICEAI VSFWFDLGIS  60
VQMDDGELDF STQEVFSSPN MGELPSSGSM DSFFDELLKD THACTHTHTC NPPGPDFSHT  120
HTCYHVHTKI VPAPDEDQVA TDDTAESAEK KSKKRPLGNK EAVRKYREKK KARAASLEDE  180
VVKLRALNQH LMKKLQNQAA LEAEIARLKC LLVDIRGRIE GEIGSFPYQK SPNANPPVVN  240
LPGSYVMNPC NMQCDDRVYC LHPGADGRIM ENVSSLNGEE FGGCEFENLQ CLANQNLGLK  300
ELRACGVGQA GSNVNSSASK RKDGHAETTF LFIFGIVCLL TFGDLVQQQL VEELTERWFS  360
SLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g02890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494476.10.0basic leucine zipper 23
RefseqXP_014494477.10.0basic leucine zipper 23
RefseqXP_014494478.10.0basic leucine zipper 23
SwissprotQ8GTS21e-107BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A4D6LJG20.0A0A4D6LJG2_VIGUN; Serine/threonine-protein kinase PBS1
STRINGXP_007131714.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25673277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.12e-91bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]