PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 289aa    MW: 32176.9 Da    PI: 5.4636
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.16.2e-2870152271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Vradi02g01570.1  70 SGRGLRQFSMK---VCEKVENrGRTTYNEVADELVAEfsdptnseltpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 152
                      689********...******99*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-4665158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.9E-3469152IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.3E-2571152IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.86E-2172153IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.55E-22157227IPR014889Transcription factor DP, C-terminal
SMARTSM011388.1E-36159286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.33E-23159240No hitNo description
PfamPF087814.9E-16188240IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGDEDDDEVL GCATTASGQS ASTNSLPPPA DNTLLKLNHL DLHADDAGSQ ASLAGKKKKR  60
GQRAVGPDKS GRGLRQFSMK VCEKVENRGR TTYNEVADEL VAEFSDPTNS ELTPDQQQYD  120
EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW KGLPRTSVND IEEIKTERLG LRNRIEKKTA  180
YLQELEEQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NYVLKAMKFC ERPQQDNTTH  240
NFTVGGEGSS MSGLCQPQGP STNLKVSNRP PTSPPLPGIL KARVKQEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3863157193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942120.0BT094212.1 Soybean clone JCVI-FLGm-18G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131528.10.0hypothetical protein PHAVU_011G020500g
RefseqXP_014523149.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-117DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1S3VYI60.0A0A1S3VYI6_VIGRR; transcription factor-like protein DPB
TrEMBLV7AD900.0V7AD90_PHAVU; Uncharacterized protein
STRINGXP_007131528.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-119Transcription factor DP