PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 297aa    MW: 33058.1 Da    PI: 5.1342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25.3e-201573148
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g            +W++Ia +++ gRt++++k++w+++l
  Vradi02g01480.1 15 KGPWTPEEDNILVDYIQKHGHGswralpklaglnRWSAIAGHLP-GRTDNEIKNFWNTHL 73
                     79******************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.88E-16480IPR009057Homeodomain-like
PROSITE profilePS5129421.1861077IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-241177IPR009057Homeodomain-like
SMARTSM007175.1E-181475IPR001005SANT/Myb domain
PfamPF002491.3E-171573IPR001005SANT/Myb domain
CDDcd001679.64E-161773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMGRAPCSDE SGLKKGPWTP EEDNILVDYI QKHGHGSWRA LPKLAGLNRW SAIAGHLPGR  60
TDNEIKNFWN THLKKKLLQM GLDPVTHRPR SDHLNLLSSL QQLLTATNIF TNSLDINALR  120
LQSDATELAK LQLLHNMLQV LVASPASNLD LLNPFGSSLP DEVLGLDQSK LQNLYNSSTG  180
FLSQNQSNFF QSFEAPPQQQ TLPTGYNHMN GGSNRSCMKS EKVDEQLDVP YSFSTALDSL  240
PKLVSASPEC STGKHMENMV NPNEFSDPSS TSTTFEMWGD FMYEEVTDAY WKDLIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523159.10.0transcription factor MYB41-like
TrEMBLA0A1S3VYJ50.0A0A1S3VYJ5_VIGRR; transcription factor MYB41-like
STRINGXP_007131513.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-66myb domain protein 9