PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 393aa    MW: 43830.7 Da    PI: 6.4316
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.6e-25140184145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Vradi02g01360.1 140 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 184
                      79****************************************986 PP
2QLQ61.52.2e-212056137
              QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     s+FT +Q+++L++Q+l++Ky++a++PvP++L+++iqk
  Vradi02g01360.1 20 SPFTVSQWEELEHQALIFKYMLAGLPVPQNLVLPIQK 56
                     89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-122056IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.132156IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-152155IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762140184IPR014977WRC domain
PfamPF088793.7E-21141183IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MNNSGGGTMM GLSNGYYGRS PFTVSQWEEL EHQALIFKYM LAGLPVPQNL VLPIQKSFNS  60
IPHAFFHHPT CQFSNPVSFL SGDFEPISYV KCVQKLPFLS FLLPNECPLS QGCVWNVGNE  120
KLCMTNITVS YCSFYGKKVD PEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK  180
PVESQTMTQS SSTVTTLDVT GGSGSSRTVN FQNLPANAVG NLQSTDSVTD HTSYHLDSIP  240
YAIPSKEYRY LQGLKSEGGE HIFFSEASGS SKVLQMESQQ LEDTWSLMSN NVASFSTSKS  300
SNDSLLHSDY PQNSFLSGEY ASEENLKEEG QSLRPFFNEW PKGRDSWSCL EDERSNQAAF  360
STTQLSISIP MSSDISATSS QSPHGENEIQ FR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523171.10.0growth-regulating factor 1
TrEMBLA0A1S3VXS30.0A0A1S3VXS3_VIGRR; growth-regulating factor 1
STRINGGLYMA11G11826.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-40growth-regulating factor 5