PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g00510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 30435.1 Da PI: 8.9799 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.7 | 1.5e-25 | 9 | 73 | 53 | 118 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgek 118 +e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k+el+g++ktLvfykgrap+g+k Vradi02g00510.1 9 EEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-KHELIGMRKTLVFYKGRAPNGQK 73 4567**************************************.999******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.954 | 1 | 101 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-24 | 10 | 73 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-8 | 13 | 71 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGSSRIGTEE QNEWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKAIYS KHELIGMRKT 60 LVFYKGRAPN GQKVFKKRVT TMRKVNEHES PSWYDEQVSF IQDMDSPKQT SQSNLVYQLP 120 YHCKKELDVP YQMPRDHFLP LLESPNPMAP YLLDHVNHST TLLPSLLIQE EHVIGQQINL 180 QTTYGKSNRN DQVTDWRVLD KFVASQLSQD GSKDNAYSNT TASIFHGNDS GNCNVQFRHF 240 DKHEMVVPPE NASTSNSSCP IALWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swm_B | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swm_C | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swm_D | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swp_A | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swp_B | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swp_C | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
3swp_D | 1e-18 | 11 | 73 | 73 | 135 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g00510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-148 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493372.1 | 0.0 | NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 8e-58 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1S3THY5 | 0.0 | A0A1S3THY5_VIGRR; NAC domain-containing protein 7 | ||||
STRING | XP_007131341.1 | 1e-152 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 2e-50 | NAC 007 |
Publications ? help Back to Top | |||
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