PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g00370.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 144aa    MW: 15839.7 Da    PI: 5.6076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g00370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.2e-0810411655
              AP2 16 vAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +A+         ++r++lg+f ++e+Aa+a++ a+  l+g
  Vradi02g00370.1 10 RAQ---S-----KTRIWLGSFASPEMAARAYDSAAFFLKG 41
                     333...3.....5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.801149IPR001471AP2/ERF domain
PfamPF008472.4E-5441IPR001471AP2/ERF domain
SMARTSM003802.2E-9755IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-161050IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-111250IPR016177DNA-binding domain
CDDcd000183.34E-161451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MPARFIVQFR AQSKTRIWLG SFASPEMAAR AYDSAAFFLK GTSATLNFPD LVHSLPRPLS  60
SSRRDIQSAA ATAALHPPSL GTDSNSNSSS WLENLGDESR ISTMSFEDVK DAPLMSPLRV  120
DLTFGDFSWN NLFHFNYDDV LMS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g00370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521333.14e-90dehydration-responsive element-binding protein 3
SwissprotQ9LYD34e-20DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3VSH68e-89A0A1S3VSH6_VIGRR; dehydration-responsive element-binding protein 3
STRINGGLYMA09G36840.23e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.13e-16DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]