PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0294s00050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 286aa    MW: 32448.6 Da    PI: 9.5193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0294s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.7e-1197142348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rWT++E+ l++++    G g+Wk I++     +++ q+ s+ qky+
  Vradi0294s00050.1  97 RWTEDEHRLFLRGLIACGEGDWKGISELYVVSKSPSQVASHAQKYK 142
                        9*****************************99************97 PP
2Myb_DNA-binding37.36.5e-12209252347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT++E++l+v +++++  + Wk +++ +   +t+ q+ s+ qky
  Vradi0294s00050.1 209 HWTEDEHKLFVLGHAKYQEN-WKEVSKNFVPSKTPTQIASHAQKY 252
                        5*****************88.*********9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.30390146IPR017930Myb domain
SuperFamilySSF466891.2E-1392146IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-1593145IPR006447Myb domain, plants
SMARTSM007171.4E-694144IPR001005SANT/Myb domain
CDDcd001671.46E-797142No hitNo description
PfamPF002497.1E-997142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-697140IPR009057Homeodomain-like
PROSITE profilePS5129412.527202257IPR017930Myb domain
SuperFamilySSF466893.98E-14203257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-11206256IPR006447Myb domain, plants
SMARTSM007177.5E-8206255IPR001005SANT/Myb domain
PfamPF002492.1E-9209252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-9209251IPR009057Homeodomain-like
CDDcd001675.67E-7210253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNPSLDLSPD LVALVTNNIQ SSGEDLFVGV HDQGVPLAYS HAPTPSYVVP TTNNTQLPSP  60
RNITLSNHVG SDWVQISNNS NQLYSYKLKS HHKRYERWTE DEHRLFLRGL IACGEGDWKG  120
ISELYVVSKS PSQVASHAQK YKIHQKASTK NKKRKSIHEV SIEPSKHALP AWIMSLDETS  180
FKDDVLNCGN HMESCNNSIV TVPRKKWKHW TEDEHKLFVL GHAKYQENWK EVSKNFVPSK  240
TPTQIASHAQ KYFIRQNTAE NNKKRKSIHD ITLQDIATVV TPSYI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0294s00050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150386e-72AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491845.11e-99uncharacterized protein LOC106754347
SwissprotQ9FNN61e-22SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S3TDK63e-98A0A1S3TDK6_VIGRR; uncharacterized protein LOC106754347
STRINGXP_007140122.12e-37(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-25MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]