PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0292s00130.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 339aa    MW: 36819.8 Da    PI: 8.0913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0292s00130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-204595256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+eeAa+a+++a+++l+ge
  Vradi0292s00130.1 45 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 95
                       578******.7*********42...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-3045102No hitNo description
SMARTSM003803.9E-3445108IPR001471AP2/ERF domain
PfamPF008476.4E-154595IPR001471AP2/ERF domain
PROSITE profilePS5103220.36345102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2845102IPR001471AP2/ERF domain
PRINTSPR003673.6E-74657IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-2046102IPR016177DNA-binding domain
PRINTSPR003673.6E-76884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLKYEWSTME LRAEATKYGS TTSPTTTATT NMATRSSKPA TMIRRFIGVR QRPSGRWVAE  60
IKDSSQHVRL WLGTYDTPEE AARAYDEAAR ALRGENARTN FAPMNQATGQ SGSNLLTGDG  120
KHGLSFASLK AKLSKNLQNI MARASDHNKS SKSRVSDHFT FASIFHRRSY QIPEGDMRNI  180
EKVVQPSIIV PPVEGAVDYA SAATWESAST VSDCSSEWVG FGKLGLDLPD GSDIGEFSVG  240
DQGFLEQLMG WVESPDVTDQ SECSRSKRFK VSSSVLVPPT FTASPYDCGS PYSGYASPYS  300
GYASPYNGYS SPYNGYASPY NGCASPCNGC ASPYYNKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14451011471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0292s00130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522489.10.0dehydration-responsive element-binding protein 2E-like
TrEMBLA0A1S3VWQ30.0A0A1S3VWQ3_VIGRR; dehydration-responsive element-binding protein 2E-like
STRINGXP_007134987.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-16related to AP2 11