PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0290s00060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 418aa    MW: 46087.6 Da    PI: 6.6803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0290s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.5e-063073461054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Vradi0290s00060.1 307 KVRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 346
                        56888999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.29297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-7307350No hitNo description
SuperFamilySSF474595.89E-12307365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049308352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9311354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSDDQFQASG NWWESGRNVR FESGETQSSS SGLTNMGNYA WQQDMGRSSS SMDNSASGGS  60
SVVFHDQKQL QVQPHHDSSA TNPTNDHPNL HMMGLGLSSQ AMDWNQASLQ LRGEKGFRSM  120
LQENLSTPGT TFQQESALSH HQQVHWRPEK LFSAESSSNE FKRGFSLDQY SSGDSTVTSQ  180
GLPCSFQMDY VGNPSSILQG LLGHESNNQQ PHQGGTASFE NRSMNFPYSA TTYGLSSNIE  240
LVPSWSKVPQ FLRASPPKQP PNNHLHFTNN APFWNANSDP AIKDARSTFI SSLQTPFSPS  300
NFDVQSKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHEQV TVLSTPYMKT  360
GAPIQHQQGS GKSKESEGPK QDLRSRGLCL VPVSSTFPVT HEPTVEYWTP TFGGTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0290s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491826.10.0transcription factor bHLH123-like
SwissprotQ8GXT36e-66BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A1S3TDK50.0A0A1S3TDK5_VIGRR; transcription factor bHLH123-like
STRINGXP_007133119.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]