PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0265s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 423aa    MW: 46246.2 Da    PI: 5.2857
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0265s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-08262295238
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                         y+GV++++++grW A+I  +     +k  +lg+fg 
  Vradi0265s00040.1 262 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGK 295
                        69***************988532...5********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.326149226IPR001471AP2/ERF domain
SMARTSM003801.1E-4160232IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-9195228IPR016177DNA-binding domain
CDDcd000188.52E-12196228No hitNo description
Gene3DG3DSA:3.30.730.105.1E-9196227IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-6261303IPR016177DNA-binding domain
PfamPF008471.7E-4262299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-4262299IPR001471AP2/ERF domain
SMARTSM003807.2E-8262310IPR001471AP2/ERF domain
PROSITE profilePS510329.769262332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAGATNWLTF SLTPMEMLRS PDSSSHCMLD NFYATNEWTN SKGLMDSESE NQPLLVPKAE  60
DFFENQTETQ QDDSSLTQIY DHGSASVYFG DQQDLNAIPG FQAFSGTNSS SELDDSVSDK  120
TTRVAPADLG AHSGESSKGA LSLCDAAAHD KAIIAVEFAT PKKWWFGRDA SKYERPSLIL  180
SLALTFAFAF NSPGKLGGYD KEEKAARAYD LAAIKYWGPT ATTNFPISNY TKELEEMKHT  240
GKQEFIASLR RKSSGFSRGA SAYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFGKGASAV  300
TNFEMSRYDV ENILNSSLPV GGVAKRLKLS SPESEKKVSV TDEQPEGTNE SSTINFSAIQ  360
PVASIPYDSA NAYPQNLFHQ FHHSNSGSSS VQKSDAIDCM LGFQDIVLYM LSFGTDKTIT  420
EM*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0265s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492748.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_022633887.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-93AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3TG470.0A0A1S3TG47_VIGRR; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_007156467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.26e-96AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]