PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0246s00360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 45866 Da PI: 9.0077 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.1e-05 | 142 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C Cg+ F +++ L++H + H Vradi0246s00360.1 142 YRCRVCGRKFYTNDKLVNHFKQlH 165 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 4.8E-7 | 61 | 128 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 2.43E-6 | 138 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-5 | 141 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.801 | 142 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 142 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 165 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 5.41E-13 | 159 | 283 | No hit | No description |
Pfam | PF01936 | 6.9E-7 | 214 | 294 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 4.8E-7 | 217 | 282 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MVTFKSYLTY RRTDNPFKVS RFRSICFFSL EATCWHIYGG LRYYHSGSEW GKNQKLNPNE 60 KPNRVGLFWD LDNKPPNAIP PFDVANKLRI AASSFGIVRY MVAYANSHTF SHVPQSVREK 120 RKERELLYRL ENKGVIKPNE PYRCRVCGRK FYTNDKLVNH FKQLHEREHG KRINQIESAR 180 GSRRVKLVAK YSMKMEKYKK AASAILTPKV GYGLADELKR AGFWVQTVLD KPQAADRALQ 240 SHIVDVMDHR RVECVVLVSD DSDFVDVIKE ARLRCLKTVV IGDIDDGVLK RTADTAFSWE 300 EILMGKAKKQ AASVVKNWKD RDILKRLEWT YNPDADKNKL DVDDIVAETS EDDNIEDTSD 360 EVDDVYKDDR GSWWELDSDN DVSEGQSGKL SDLSVHK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0246s00360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521739.1 | 0.0 | uncharacterized protein LOC106778308 | ||||
TrEMBL | A0A1S3VUJ7 | 0.0 | A0A1S3VUJ7_VIGRR; uncharacterized protein LOC106778308 | ||||
STRING | XP_007163793.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-124 | C2H2 family protein |