PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0246s00340.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 449aa MW: 50604.4 Da PI: 5.13

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0246s00340.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	7.6e-35	15	105	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+ye+++d++++e++sws+n+n+f+v+++ ef++ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F k++k+l Vradi0246s00340.1 15 FLLKTYEMVDDSSTEEIVSWSSNNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPER---------WEFANEDFVKDQKHL 97 9**************************************************************999.........*********** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l++i+r+k Vradi0246s00340.1 98 LKNIHRRK 105 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.4E-37	11	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.07E-35	11	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-58	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.2E-30	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.9E-19	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.9E-19	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	54	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.9E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MNVLGPAAPA GPAPFLLKTY EMVDDSSTEE IVSWSSNNNT FIVWNPAEFS RLLLPTFFKH 60 NNFSSFIRQL NTYGFRKVHP ERWEFANEDF VKDQKHLLKN IHRRKPIHSH SLTQPLVDSE 120 RSAFEEQIDK LSRDKATIQS NIFRFKQHHS AAKTYLEDLC LRLDGMEERQ QNLLTFFQNA 180 LHNPTLLQQI TRKIESMDLL AYNKKRRLPP RLDDRDHVAG NTLAECFGTE FGNVSHHEFS 240 DKLTLELSPA VSEMNLVVSC STQSSNEEGE SPHNMMLPEI AEIAQTGESL NFEMHSCLSR 300 TATASESPKL DSNNEDGDSY ISCLLNLSLA SSPLQAKRNT FPDRSTFPEF GKLDGSKFCA 360 DDIKEYDAGA SSSRSLNEVT NLAEATPTAP VRVNDVFWEQ FLTERPGCSD TEGSMSTHNV 420 NAYVADQDEG RSVHRISGNV MDMDQLTL*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MNVLGPAAPA GPAPFLLKTY EMVDDSSTEE IVSWSSNNNT FIVWNPAEFS RLLLPTFFKH  60
NNFSSFIRQL NTYGFRKVHP ERWEFANEDF VKDQKHLLKN IHRRKPIHSH SLTQPLVDSE  120
RSAFEEQIDK LSRDKATIQS NIFRFKQHHS AAKTYLEDLC LRLDGMEERQ QNLLTFFQNA  180
LHNPTLLQQI TRKIESMDLL AYNKKRRLPP RLDDRDHVAG NTLAECFGTE FGNVSHHEFS  240
DKLTLELSPA VSEMNLVVSC STQSSNEEGE SPHNMMLPEI AEIAQTGESL NFEMHSCLSR  300
TATASESPKL DSNNEDGDSY ISCLLNLSLA SSPLQAKRNT FPDRSTFPEF GKLDGSKFCA  360
DDIKEYDAGA SSSRSLNEVT NLAEATPTAP VRVNDVFWEQ FLTERPGCSD TEGSMSTHNV  420
NAYVADQDEG RSVHRISGNV MDMDQLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	5	104	19	129	Heat shock factor protein 1
5d5v_B	1e-21	5	104	19	129	Heat shock factor protein 1
5d5v_D	1e-21	5	104	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0246s00340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014521699.1	0.0	heat stress transcription factor A-5
Refseq	XP_022631854.1	0.0	heat stress transcription factor A-5
Refseq	XP_022631855.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-126	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1S3VUF5	0.0	A0A1S3VUF5_VIGRR; heat stress transcription factor A-5
STRING	XP_007163811.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-125	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]