PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0235s00070.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 139aa MW: 15402.8 Da PI: 10.7494

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0235s00070.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	67.1	4.9e-21	81	138	62	120
NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektd 120 ++d+ky++g+r nrat++gyWkatgkd++++s +++l+g+kktLvfy+grapkg++t+ Vradi0235s00070.1 81 KTKDRKYPNGHRLNRATNHGYWKATGKDRKIKS-GSALIGMKKTLVFYTGRAPKGKRTN 138 5689***************************.9********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.544	17	138	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-21	81	138	IPR003441	NAC domain
Pfam	PF02365	2.6E-6	90	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MARGFGAKKM KVMRNGGGVA ACLRGEDDEN ARLVRCENLF EDGNHLYRVL DDDLIVVSQC 60 HNISRGISTL KPKPLAENCV KTKDRKYPNG HRLNRATNHG YWKATGKDRK IKSGSALIGM 120 KKTLVFYTGR APKGKRTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	83	138	79	134	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	83	138	79	134	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	83	138	79	134	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	83	138	79	134	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	83	138	82	137	NAC domain-containing protein 19
3swm_B	2e-16	83	138	82	137	NAC domain-containing protein 19
3swm_C	2e-16	83	138	82	137	NAC domain-containing protein 19
3swm_D	2e-16	83	138	82	137	NAC domain-containing protein 19
3swp_A	2e-16	83	138	82	137	NAC domain-containing protein 19
3swp_B	2e-16	83	138	82	137	NAC domain-containing protein 19
3swp_C	2e-16	83	138	82	137	NAC domain-containing protein 19
3swp_D	2e-16	83	138	82	137	NAC domain-containing protein 19
4dul_A	2e-16	83	138	79	134	NAC domain-containing protein 19
4dul_B	2e-16	83	138	79	134	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0235s00070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	2e-76	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	1e-27	NAC transcription factor-like 9