PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0215s00360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 306aa    MW: 34039.6 Da    PI: 5.2856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0215s00360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-193988255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Vradi0215s00360.1 39 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 88
                       69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.1E-333997IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-223997IPR016177DNA-binding domain
PROSITE profilePS5103224.1183996IPR001471AP2/ERF domain
SMARTSM003806.7E-3839102IPR001471AP2/ERF domain
CDDcd000184.50E-343997No hitNo description
PfamPF008471.8E-114088IPR001471AP2/ERF domain
PRINTSPR003678.9E-124051IPR001471AP2/ERF domain
PRINTSPR003678.9E-126278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MCGGAIISDF IPAGPAGRSR RVTPDILWPN LKKRKRKNQY RGIRQRPWGK WAAEIRDPRK  60
GVRVWLGTFS TAEEAARAYD AEARRIRGKK AKVNFPDEPS AVSSKRLKVI PEESLSSVKP  120
KMNHLFNFGD NLEDYYSPVD QVEQKPLVNQ YVNPGPFTGN CVQLSPVTPS ADVTAYFSSE  180
HSSNSFDYSD LGWGEQVPRT PEISSILSAP LEGESQFVQD QIQKKDSEDM MPVQDDSAKT  240
LSEELADIES QLKFFEAPLF DGSWGDASLA SLLGRMVVMV LLMELQEEVT CLRTCVVYSL  300
VANAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-223996260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-223696263ATERF1
3gcc_A7e-223696263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0215s00360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521616.11e-176ethylene-responsive transcription factor RAP2-12 isoform X1
TrEMBLA0A1S3VTA51e-175A0A1S3VTA5_VIGRR; ethylene-responsive transcription factor RAP2-12 isoform X1
STRINGXP_007135380.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.34e-38related to AP2 2