PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0215s00320.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 363aa    MW: 41062.1 Da    PI: 6.8271
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0215s00320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.6e-3270174199
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  Vradi0215s00320.1  70 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGD 161
                        89***************************966667889*************************************************66588 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                          + +l++ ++r+
  Vradi0215s00320.1 162 lYRHRLYIDWRRR 174
                        8999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4261180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-3066172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-2668157No hitNo description
PROSITE profilePS5086314.42470175IPR003340B3 DNA binding domain
PfamPF023621.3E-2970174IPR003340B3 DNA binding domain
SMARTSM010191.6E-2470175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MELMQEVKGY SDSREEEEEE ETAEEIVTRE ESSRSGAAAS SVFGHHASGS SSADANVNNL  60
QQPSEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SANEKGLLLN FEDRNGKSWR  120
FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DIVSFQRGVG DLYRHRLYID WRRRPDHHHH  180
HGPDPSATLF TPFFLPNQPH FIRWGATGRF YSLPSPNPPR HHDHLQQHLN YNTMYHQHHH  240
PFHHQLQGAA GAGGNGTHHY NNYHDMTSSG SGSVYYLRLF GVNMECASST SEDPNCFSLL  300
SSSSMAHATM ANSNSPPSSS LPPLQLLRED SLSSPSSARF GDQRGEQPSM LFDLDPSLQY  360
RQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-66641752114B3 domain-containing transcription factor NGA1
5os9_B4e-66641752114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0215s00320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521558.11e-155B3 domain-containing transcription factor NGA1 isoform X2
SwissprotO827993e-71NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1S3VT541e-154A0A1S3VT54_VIGRR; B3 domain-containing transcription factor NGA1 isoform X2
STRINGXP_007135337.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-63B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]