PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0215s00270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 736aa MW: 81538.6 Da PI: 6.5153 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Vradi0215s00270.1 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-16 | 18 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.913 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-15 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 736 aa Download sequence Send to blast |
MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KIADSRAKWY RGLDKPYLGK WLSGADGGGF LFQEHILEEI HRLIDHHDKS 120 AVPTLGTGKF RDTLEKEALV KGVPIGQALD IDIPPPRPKR KPSNPYPRKT RIGTATLHSG 180 AKDGKLNLVE SSHDNQALDL EKEPLPEIYD LDEGPTTVKE NKDENCSKVF TVIQEVPCSS 240 LSSANRSSIS MSVPLGNSCV FKEITTSAKE VITRDEKTES FLTVELENGN LEINDGKQAN 300 GTSKNSTLEN SDALQMKLVQ NEKTDGLDSA LTIEGMQGNN QNYPRHVTVH VVDGNLGTCT 360 QNPSQDMLFR DCMFQPIGGA NGQPHLFTNS APSNTRESQN NTARSSAHQS FLPYPPFTQH 420 NQDDYQSFLH MSSTFSNLIV STLLQNPAAH AAAIASMNTA ETPSLKADQE KSTLQNPPLH 480 DQMMHPEYSE APQAQHSASK SLAVISSDSE SGDAKLNTSP KATDHETNEI ISEHLDSNKT 540 KGRKQVDRSS CGSNTASSSD VETDALGKDE KGKEEPETPD ANHLALEFSN RRRSICNLTD 600 SWKEVSEEGK LAFQALFSRE VLPQSFSPPH ALKNKDQMGI ITNDNQQTID DRNEDLDSKK 660 CSSNYKPMQK NPPFVENNVG LLTLGLGQGK LKTRRTGFKP YKRCSMEAKE NRIGASNQGE 720 EKGCKRIRLE GDTST* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0215s00270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ420902 | 0.0 | AJ420902.2 Phaseolus vulgaris mRNA for LHY protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028216411.1 | 0.0 | protein LHY-like isoform X3 | ||||
Refseq | XP_028216412.1 | 0.0 | protein LHY-like isoform X3 | ||||
TrEMBL | A0A0B2PPQ5 | 0.0 | A0A0B2PPQ5_GLYSO; Protein LHY | ||||
STRING | GLYMA19G45030.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 3e-41 | MYB_related family protein |