PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0215s00160.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 697aa MW: 77912.5 Da PI: 4.3955

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0215s00160.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.9	8.2e-40	4	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.....eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +G+ F+Ptdeelv+ +Lk+k+ +++ ++ +v++++d++ vePw+ p+++++ +++ew+fFs+ + ky++++r +r+tksg+Wk tg+ Vradi0215s00160.1 4 VGYGFRPTDEELVHSHLKHKLLDDDPRV-HVMTDIDLCAVEPWQVPEMLAKsvipfKNSEWFFFSPVKLKYSNSERFERTTKSGFWKPTGEP 94 799********************999.99***********5332235566889***************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v ++ +++++g+kktLvfy gra+k++k++Wv+hey++ Vradi0215s00160.1 95 RDVRTEdTNTVIGTKKTLVFYIGRASKAVKSNWVIHEYHA 134 98666779************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.029	2	152	IPR003441	NAC domain
Pfam	PF02365	2.8E-21	4	133	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-43	4	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MEIVGYGFRP TDEELVHSHL KHKLLDDDPR VHVMTDIDLC AVEPWQVPEM LAKSVIPFKN 60 SEWFFFSPVK LKYSNSERFE RTTKSGFWKP TGEPRDVRTE DTNTVIGTKK TLVFYIGRAS 120 KAVKSNWVIH EYHALNSIQS QNAFVLCRLK KKPGKTTEGG TTALICVEEE SSRSVVSDNE 180 HQATAEGVPP GDTSNRMETI CQLTYQAEKN ISPAEQSLID IEQDEASFPN PSNDAYFRKE 240 INNRHIPYAQ TPFEPMHTSL GSTQNPFEAG SMLTLSEPTQ PSFETTKTPF ETMETPFDTR 300 ETLLGTMQSP LGAMQTPLGA MYTSIETTQT SLGYMLTPLE TTQPSFETIK TPFKTMETPF 360 DTMETLSGTL QSPMGAMYTS FETAQTSLGS MLTPLETTQP SFETIKTPFE TMETPFDTME 420 TLSGTMQTPL GAMYTSFETM QTSLGSMLTP FKTTQSSFET TNTPFETMET PLVAMVTPLG 480 AMYTSFETTQ TSLGSMLTPF ETTQTSFETS KSLETPFEII ETPFGAMQTP LGAMYTPPEM 540 MHPPSDLGSM QTPFGVTSPL ASRKIPFESR KIPFQYTHTP SQTPFEIPKS LKRAYCESTC 600 INPEVVLKLD ACIDDSSTMC TKYLNSDEYH SSKRFKTSYD VVDDDTDLLF SNQEASQKQE 660 SIFQDNLRGV ETSSCDSTVY NPEEINWNEI SSFPCT*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MEIVGYGFRP TDEELVHSHL KHKLLDDDPR VHVMTDIDLC AVEPWQVPEM LAKSVIPFKN  60
SEWFFFSPVK LKYSNSERFE RTTKSGFWKP TGEPRDVRTE DTNTVIGTKK TLVFYIGRAS  120
KAVKSNWVIH EYHALNSIQS QNAFVLCRLK KKPGKTTEGG TTALICVEEE SSRSVVSDNE  180
HQATAEGVPP GDTSNRMETI CQLTYQAEKN ISPAEQSLID IEQDEASFPN PSNDAYFRKE  240
INNRHIPYAQ TPFEPMHTSL GSTQNPFEAG SMLTLSEPTQ PSFETTKTPF ETMETPFDTR  300
ETLLGTMQSP LGAMQTPLGA MYTSIETTQT SLGYMLTPLE TTQPSFETIK TPFKTMETPF  360
DTMETLSGTL QSPMGAMYTS FETAQTSLGS MLTPLETTQP SFETIKTPFE TMETPFDTME  420
TLSGTMQTPL GAMYTSFETM QTSLGSMLTP FKTTQSSFET TNTPFETMET PLVAMVTPLG  480
AMYTSFETTQ TSLGSMLTPF ETTQTSFETS KSLETPFEII ETPFGAMQTP LGAMYTPPEM  540
MHPPSDLGSM QTPFGVTSPL ASRKIPFESR KIPFQYTHTP SQTPFEIPKS LKRAYCESTC  600
INPEVVLKLD ACIDDSSTMC TKYLNSDEYH SSKRFKTSYD VVDDDTDLLF SNQEASQKQE  660
SIFQDNLRGV ETSSCDSTVY NPEEINWNEI SSFPCT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-27	5	152	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-27	5	152	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-27	5	152	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-27	5	152	20	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-27	5	152	20	165	NAC domain-containing protein 19
4dul_B	2e-27	5	152	20	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0215s00160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-158	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014521569.1	0.0	uncharacterized protein LOC106778155
TrEMBL	A0A1S3VU24	0.0	A0A1S3VU24_VIGRR; uncharacterized protein LOC106778155
STRING	XP_007135335.1	1e-113	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	2e-37	NAC domain containing protein 62