PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0206s00150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 509aa    MW: 56629.2 Da    PI: 5.9067
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0206s00150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-09221263345
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Vradi0206s00150.1 221 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 263
                        568899************************9777777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7213266No hitNo description
SMARTSM003388.7E-8219282IPR004827Basic-leucine zipper domain
PfamPF077167.5E-7219265IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415221265IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-7223266No hitNo description
CDDcd147089.73E-23223275No hitNo description
PROSITE patternPS000360226241IPR004827Basic-leucine zipper domain
PfamPF141443.4E-33305380IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGSRTTGGFG LEDDKGAERG MPSFNSELPI SNSREPYWKS MSHNKLYKKL DDRIVFSYAE  60
GSTIDSFRVS DFGAFDQPYR VEDAVGLSGI ERRDCVEGEV AVEADEGNPI YNSLKVSSQT  120
IYPGSVPIHS LDQLPTSLDK SPLTNQTEPH RLRLQKVQSS NPDTILVGNT DNQEESAMAD  180
ASPRTDISTD VDTDDKNQPF DRNQSLAIVS DSSDRSKDKS DQKTLRRLAQ NREAARKSRL  240
RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISSSGDQA HTLSGNGAMQ FDAEYARWLE  300
EQNRQINELR AAVNSHASDT ELRMIVDGIL AHYDEIFRLK GVAAKADVFH LLSGMWKTPA  360
ERCFLWLGGF RSSELLKLLA NQLEPLTEQQ LMGITNLQQS SQQAEDALSQ GMEALQQSLA  420
ETLSTGAPAS SGSSGNVANY MGQMAMAMGK LGTLEGFIRQ ADNLRQQTLQ QMHRILTTRQ  480
SARALLAIHD YFSRLRALSS LWLARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0206s00150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026080.0AF402608.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524589.10.0transcription factor TGA2.2 isoform X1
RefseqXP_014524590.10.0transcription factor TGA2.2 isoform X1
RefseqXP_014524592.10.0transcription factor TGA2.2 isoform X1
RefseqXP_014524593.10.0transcription factor TGA2.2 isoform X1
RefseqXP_014524594.10.0transcription factor TGA2.2 isoform X1
RefseqXP_022632831.10.0transcription factor TGA2.2 isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A1S3W2690.0A0A1S3W269_VIGRR; transcription factor TGA2.2 isoform X1
STRINGXP_007133721.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]